Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46993 * 2 1 4 4 H 1.08998 * 109.47763 * 304.99962 * 3 2 1 5 5 C 1.50709 * 109.46835 * 185.00169 * 3 2 1 6 6 H 1.07996 * 119.99519 * 240.00012 * 5 3 2 7 7 C 1.37870 * 119.99735 * 60.00282 * 5 3 2 8 8 N 1.31512 * 120.00391 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99559 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47286 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47120 * 120.00085 * 9 7 5 12 12 H 1.48495 * 109.47003 * 239.99593 * 9 7 5 13 13 N 1.46497 * 109.47369 * 65.00294 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00011 * 13 3 2 15 15 O 1.21284 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00418 * 179.97438 * 14 13 3 17 17 H 1.08997 * 115.55822 * 34.31154 * 16 14 13 18 18 C 1.53001 * 117.49878 * 248.62038 * 16 14 13 19 19 C 1.52994 * 117.50144 * 179.97438 * 16 14 13 20 20 H 1.09007 * 117.51702 * 0.02562 * 19 16 14 21 21 C 1.50696 * 117.50205 * 214.98314 * 19 16 14 22 22 O 1.20833 * 119.99655 * 359.97438 * 21 19 16 23 23 O 1.34222 * 120.00432 * 180.26180 * 21 19 16 24 24 H 1.09002 * 109.47362 * 300.00320 * 1 2 3 25 25 H 1.09009 * 109.47289 * 59.99373 * 1 2 3 26 26 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46711 * 240.00355 * 2 1 3 28 28 H 1.08993 * 109.46920 * 120.00470 * 2 1 3 29 29 H 0.97002 * 120.00031 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00281 * 94.99583 * 13 3 2 31 31 H 1.09001 * 117.49683 * 145.01502 * 18 16 14 32 32 H 1.08997 * 117.51656 * 359.97438 * 18 16 14 33 33 H 0.96701 * 117.00458 * 179.72178 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5175 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6327 0.4342 16 6 0.0363 3.3377 2.6549 17 1 0.8405 3.8424 3.1904 18 6 -1.0598 2.6726 3.4898 19 6 -1.3584 3.9629 2.7228 20 1 -1.9880 3.8871 1.8362 21 6 -1.5152 5.2289 3.5251 22 8 -0.5593 5.7116 4.0848 23 8 -2.7177 5.8170 3.6227 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0618 -2.9496 30 1 2.2720 2.1231 1.9978 31 1 -0.9768 2.7397 4.5746 32 1 -1.4930 1.7483 3.1076 33 1 -2.7697 6.6249 4.1516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251387573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = -113.370687 kcal Electronic energy + Delta-G solvation = -17295.243849 eV Core-core repulsion = 14321.554712 eV Total energy + Delta-G solvation = -2973.689137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63078 -39.20749 -36.70983 -35.86288 -34.79064 -32.38012 -30.93556 -27.28981 -25.78692 -23.97008 -22.76470 -21.00325 -19.81612 -19.33454 -18.44052 -17.43338 -16.70712 -15.78655 -15.48492 -15.35977 -14.60189 -14.46815 -13.92936 -13.53123 -12.71345 -12.47131 -12.34476 -12.07332 -11.73715 -11.54158 -11.28630 -11.02060 -10.87972 -10.84675 -10.63734 -10.60354 -10.31945 -10.17064 -9.65184 -9.10773 -9.04223 -8.51959 -7.86551 -6.13866 -4.23211 1.93960 2.72292 3.05874 3.23338 3.31520 3.34292 3.86356 4.05227 4.36191 4.54498 4.77174 5.06865 5.18173 5.21494 5.43661 5.59474 5.87308 5.93196 6.32069 6.36392 6.42624 6.62735 7.00908 7.16641 7.33405 7.41260 7.60161 7.71006 7.76262 7.88020 8.15927 8.63073 8.75523 9.08270 9.44271 10.91531 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.005338 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.255921 B = 5243.987899 C = 5693.743724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.529 3.471 15 O -0.547 6.547 16 C -0.150 4.150 17 H 0.134 0.866 18 C -0.119 4.119 19 C -0.144 4.144 20 H 0.149 0.851 21 C 0.513 3.487 22 O -0.516 6.516 23 O -0.511 6.511 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.100 0.900 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.391 0.609 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 4.728 11.039 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.426 6.426 16 C -0.172 4.172 17 H 0.151 0.849 18 C -0.156 4.156 19 C -0.164 4.164 20 H 0.167 0.833 21 C 0.356 3.644 22 O -0.404 6.404 23 O -0.322 6.322 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.118 0.882 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.507 4.361 10.070 13.885 hybrid contribution 1.288 0.622 0.575 1.542 sum -7.219 4.983 10.645 13.793 Atomic orbital electron populations 1.21844 0.98375 0.98067 1.01175 1.21938 0.92606 0.99746 1.02385 1.18839 0.94334 0.89224 0.80840 0.93216 1.21272 0.90663 1.38967 1.06340 0.91967 1.24880 0.98644 0.94773 0.95355 1.69901 1.35061 1.37650 1.09368 0.86398 0.84827 0.77767 0.78143 1.19725 1.20871 1.20880 1.46414 1.14237 1.55344 1.18608 1.19223 0.83069 0.79192 0.87180 1.90679 1.51679 1.60223 1.40015 1.22509 0.92669 1.02755 0.99218 0.84859 1.23055 0.99232 0.94725 0.98619 1.21607 1.01963 0.90084 1.02697 0.83302 1.22344 0.79839 0.84531 0.77690 1.90722 1.40539 1.64272 1.44888 1.84520 1.34700 1.43551 1.69440 0.94348 0.93136 0.95799 0.88227 0.94943 0.92601 0.77688 0.87359 0.86514 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.84 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.70 -14.14 5.02 -54.93 -0.28 -14.42 16 14 C 0.53 10.09 6.18 -10.99 -0.07 10.02 16 15 O -0.55 -12.16 13.40 5.55 0.07 -12.08 16 16 C -0.15 -2.18 5.70 -91.77 -0.52 -2.70 16 17 H 0.13 1.84 7.67 -51.93 -0.40 1.44 16 18 C -0.12 -1.36 9.94 -26.71 -0.27 -1.63 16 19 C -0.14 -1.88 5.81 -91.76 -0.53 -2.42 16 20 H 0.15 2.04 7.67 -51.93 -0.40 1.64 16 21 C 0.51 6.42 8.11 36.00 0.29 6.71 16 22 O -0.52 -7.75 17.02 -18.76 -0.32 -8.07 16 23 O -0.51 -4.87 13.42 -39.24 -0.53 -5.40 16 24 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 25 H 0.05 1.17 7.85 -51.92 -0.41 0.76 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.41 1.97 9.10 45.56 0.41 2.39 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -31.46 285.60 -5.98 -37.44 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.37 Total: 8.51 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.91 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.35 Total: -38.26 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.77 Total: -25.55 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.46 -5.98 -37.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251387573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.926 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds