Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46993 * 2 1 4 4 H 1.08998 * 109.47763 * 304.99962 * 3 2 1 5 5 C 1.50709 * 109.46835 * 185.00169 * 3 2 1 6 6 H 1.07996 * 119.99519 * 240.00012 * 5 3 2 7 7 C 1.37870 * 119.99735 * 60.00282 * 5 3 2 8 8 N 1.31512 * 120.00391 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99559 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47286 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47120 * 120.00085 * 9 7 5 12 12 H 1.48495 * 109.47003 * 239.99593 * 9 7 5 13 13 N 1.46497 * 109.47369 * 65.00294 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00011 * 13 3 2 15 15 O 1.21284 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00418 * 179.97438 * 14 13 3 17 17 H 1.08997 * 115.55822 * 34.31154 * 16 14 13 18 18 C 1.53001 * 117.49878 * 248.62038 * 16 14 13 19 19 C 1.52994 * 117.50144 * 179.97438 * 16 14 13 20 20 H 1.09007 * 117.51702 * 0.02562 * 19 16 14 21 21 C 1.50696 * 117.50205 * 214.98314 * 19 16 14 22 22 O 1.20833 * 119.99655 * 359.97438 * 21 19 16 23 23 O 1.34222 * 120.00432 * 180.26180 * 21 19 16 24 24 H 1.09002 * 109.47362 * 300.00320 * 1 2 3 25 25 H 1.09009 * 109.47289 * 59.99373 * 1 2 3 26 26 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46711 * 240.00355 * 2 1 3 28 28 H 1.08993 * 109.46920 * 120.00470 * 2 1 3 29 29 H 0.97002 * 120.00031 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00281 * 94.99583 * 13 3 2 31 31 H 1.09001 * 117.49683 * 145.01502 * 18 16 14 32 32 H 1.08997 * 117.51656 * 359.97438 * 18 16 14 33 33 H 0.96701 * 117.00458 * 179.72178 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5175 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6327 0.4342 16 6 0.0363 3.3377 2.6549 17 1 0.8405 3.8424 3.1904 18 6 -1.0598 2.6726 3.4898 19 6 -1.3584 3.9629 2.7228 20 1 -1.9880 3.8871 1.8362 21 6 -1.5152 5.2289 3.5251 22 8 -0.5593 5.7116 4.0848 23 8 -2.7177 5.8170 3.6227 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0618 -2.9496 30 1 2.2720 2.1231 1.9978 31 1 -0.9768 2.7397 4.5746 32 1 -1.4930 1.7483 3.1076 33 1 -2.7697 6.6249 4.1516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251387573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = -135.941965 kcal Electronic energy + Delta-G solvation = -17296.222613 eV Core-core repulsion = 14321.554712 eV Total energy + Delta-G solvation = -2974.667901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68809 -40.62694 -37.86166 -37.03673 -36.37952 -34.28351 -32.75466 -29.14779 -26.97333 -25.41390 -24.41888 -22.15254 -21.43024 -20.91211 -19.52076 -18.71905 -18.16596 -17.21288 -16.97795 -16.67761 -16.21645 -16.12890 -15.21769 -14.86846 -14.58078 -13.85854 -13.70520 -13.41469 -13.26772 -13.15288 -12.89535 -12.70051 -12.62895 -12.13437 -12.09841 -11.89079 -11.73534 -11.63831 -11.51276 -11.03344 -10.70148 -10.51096 -9.63502 -8.15989 -6.32988 0.96809 1.44100 1.45745 1.56867 1.61232 1.88871 2.38072 2.65610 2.78546 3.13738 3.46109 3.73139 3.95606 4.20002 4.33662 4.52435 4.59541 4.63316 4.79338 4.85819 4.95401 5.08933 5.29224 5.46022 5.53951 5.57933 5.62845 5.81546 5.93155 6.18537 6.75252 6.96341 6.98122 7.33837 7.56104 8.89447 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.005338 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.255921 B = 5243.987899 C = 5693.743724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.528 3.472 15 O -0.583 6.583 16 C -0.162 4.162 17 H 0.144 0.856 18 C -0.088 4.088 19 C -0.148 4.148 20 H 0.140 0.860 21 C 0.523 3.477 22 O -0.543 6.543 23 O -0.503 6.503 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.139 0.861 32 H 0.122 0.878 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 4.907 13.141 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.347 5.347 14 C 0.315 3.685 15 O -0.465 6.465 16 C -0.183 4.183 17 H 0.161 0.839 18 C -0.125 4.125 19 C -0.167 4.167 20 H 0.158 0.842 21 C 0.367 3.633 22 O -0.434 6.434 23 O -0.317 6.317 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.157 0.843 32 H 0.140 0.860 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -8.572 4.567 12.218 15.608 hybrid contribution 1.200 0.625 -0.091 1.356 sum -7.372 5.192 12.127 15.111 Atomic orbital electron populations 1.21688 0.96721 0.99282 1.00430 1.21779 0.94021 0.98876 1.01366 1.18416 0.93629 0.89390 0.81232 0.98334 1.21617 0.91528 1.38834 1.06679 0.91176 1.25734 1.03179 0.94393 0.95030 1.70048 1.36935 1.38393 1.09889 0.85346 0.79306 0.77840 0.78126 1.18612 1.20359 1.21093 1.46185 1.15306 1.55572 1.17604 1.19913 0.81974 0.78274 0.88381 1.90664 1.52562 1.61423 1.41837 1.22267 0.94026 1.04516 0.97527 0.83863 1.23241 0.95533 0.93940 0.99827 1.21605 1.00355 0.91621 1.03155 0.84232 1.22086 0.80103 0.84103 0.76976 1.90722 1.41541 1.64982 1.46184 1.84466 1.32951 1.44649 1.69595 0.93271 0.95640 0.93476 0.91110 0.93882 0.92602 0.76069 0.84346 0.86016 0.70546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.52 71.98 0.61 -4.74 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 3 C 0.28 14.00 2.24 44.25 0.10 14.10 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -28.86 8.73 25.60 0.22 -28.63 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -51.96 11.29 21.44 0.24 -51.72 16 9 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.70 -28.25 5.02 -446.09 -2.24 -30.49 16 14 C 0.53 20.02 6.18 87.66 0.54 20.57 16 15 O -0.58 -26.44 13.40 -3.04 -0.04 -26.48 16 16 C -0.16 -4.44 5.70 -11.54 -0.07 -4.51 16 17 H 0.14 3.68 7.67 -2.39 -0.02 3.66 16 18 C -0.09 -1.75 9.94 30.61 0.30 -1.45 16 19 C -0.15 -3.59 5.81 -11.53 -0.07 -3.66 16 20 H 0.14 3.70 7.67 -2.38 -0.02 3.68 16 21 C 0.52 11.91 8.11 71.23 0.58 12.49 16 22 O -0.54 -15.20 17.02 21.94 0.37 -14.83 16 23 O -0.50 -8.23 13.42 -51.34 -0.69 -8.92 16 24 H 0.05 1.99 5.65 -2.39 -0.01 1.97 16 25 H 0.02 1.19 7.85 -2.38 -0.02 1.17 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.40 13.98 8.54 -92.71 -0.79 13.19 16 31 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.43 2.88 9.10 -74.06 -0.67 2.21 16 Total: -1.00 -69.09 285.60 2.20 -66.90 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.32 Total: 21.69 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 2.84 Total: -0.18 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.00 Total: -82.21 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.36 Total: -50.23 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -69.09 2.20 -66.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251387573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.045 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds