Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47276 * 269.99678 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99399 * 3 2 1 6 6 H 1.48503 * 109.47297 * 149.99679 * 3 2 1 7 7 C 1.37878 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99817 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.47034 * 180.02562 * 9 7 2 11 11 N 1.31858 * 119.05338 * 269.72568 * 10 9 7 12 12 C 1.32367 * 121.04621 * 180.28466 * 11 10 9 13 13 C 1.38448 * 119.17985 * 359.97438 * 12 11 10 14 14 C 1.39646 * 118.28824 * 0.02562 * 13 12 11 15 15 C 1.48391 * 120.54900 * 180.02562 * 14 13 12 16 16 C 1.39296 * 119.72118 * 179.97438 * 15 14 13 17 17 C 1.38467 * 119.06766 * 179.97438 * 16 15 14 18 18 C 1.38725 * 118.49960 * 359.97438 * 17 16 15 19 19 C 1.38351 * 119.35570 * 0.02562 * 18 17 16 20 20 N 1.31679 * 120.89194 * 359.71690 * 19 18 17 21 21 N 1.31634 * 119.06132 * 90.00050 * 10 9 7 22 22 H 0.96998 * 119.99685 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47543 * 60.00168 * 9 7 2 24 24 H 1.09004 * 109.47215 * 299.99711 * 9 7 2 25 25 H 1.07998 * 120.40827 * 180.02562 * 12 11 10 26 26 H 1.08005 * 120.85416 * 180.02562 * 13 12 11 27 27 H 1.07996 * 120.46262 * 0.02562 * 16 15 14 28 28 H 1.07999 * 120.75177 * 180.02562 * 17 16 15 29 29 H 1.08000 * 120.32202 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.55274 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 7 4.2320 -3.2171 1.1536 12 6 4.6784 -4.4623 1.1995 13 6 4.9175 -5.1378 0.0149 14 6 4.6759 -4.4705 -1.1878 15 6 4.9145 -5.1470 -2.4868 16 6 4.6671 -4.4653 -3.6762 17 6 4.8949 -5.1093 -4.8806 18 6 5.3635 -6.4148 -4.8549 19 6 5.5874 -7.0311 -3.6367 20 7 5.3671 -6.3936 -2.5058 21 7 4.2274 -3.2175 -1.1497 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 4.8532 -4.9457 2.1493 26 1 5.2815 -6.1546 0.0208 27 1 4.3036 -3.4485 -3.6590 28 1 4.7128 -4.6063 -5.8188 29 1 5.5516 -6.9448 -5.7769 30 1 5.9518 -8.0476 -3.6130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259087376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = 60.469891 kcal Electronic energy + Delta-G solvation = -15717.935029 eV Core-core repulsion = 13091.385857 eV Total energy + Delta-G solvation = -2626.549173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09809 -40.80976 -35.71511 -35.10564 -34.03931 -33.36312 -31.77347 -30.46906 -26.26716 -25.97653 -24.41810 -23.53017 -22.40553 -19.09477 -18.76389 -18.41803 -17.05503 -16.74662 -16.44110 -16.36868 -15.97451 -15.58810 -14.89959 -14.76075 -14.55162 -14.07625 -13.97031 -13.73919 -12.89318 -12.73896 -12.47101 -12.06523 -11.96782 -11.75860 -11.60018 -10.90653 -10.81430 -10.63728 -10.57192 -10.17861 -9.71672 -8.33091 -6.40056 -0.65694 0.06823 0.29584 0.67765 1.38307 1.41045 1.53133 2.35079 2.52885 2.63950 3.00767 3.05165 3.21316 3.44057 3.71806 3.98294 4.07025 4.11581 4.19718 4.22318 4.44548 4.60476 4.70998 4.86403 4.90755 5.10608 5.15938 5.22695 5.39264 5.50735 5.70265 6.06764 6.18041 6.59958 6.86587 7.21434 7.21562 8.83977 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.005954 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.445390 B = 4701.706074 C = 5308.048503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.518 4.518 8 H 0.017 0.983 9 C 0.054 3.946 10 C 0.340 3.660 11 N -0.540 5.540 12 C 0.142 3.858 13 C -0.204 4.204 14 C 0.188 3.812 15 C 0.132 3.868 16 C -0.144 4.144 17 C -0.080 4.080 18 C -0.145 4.145 19 C 0.093 3.907 20 N -0.485 5.485 21 N -0.529 5.529 22 H 0.271 0.729 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.211 0.789 26 H 0.179 0.821 27 H 0.129 0.871 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.745 -13.328 -8.810 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.557 4.557 8 H 0.035 0.965 9 C 0.015 3.985 10 C 0.074 3.926 11 N -0.255 5.255 12 C -0.023 4.023 13 C -0.226 4.226 14 C 0.043 3.957 15 C -0.003 4.003 16 C -0.165 4.165 17 C -0.106 4.106 18 C -0.165 4.165 19 C -0.067 4.067 20 N -0.195 5.195 21 N -0.244 5.244 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.227 0.773 26 H 0.196 0.804 27 H 0.147 0.853 28 H 0.185 0.815 29 H 0.199 0.801 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.418 -12.690 -7.994 20.805 hybrid contribution -0.339 0.364 -0.567 0.754 sum 14.079 -12.326 -8.561 20.578 Atomic orbital electron populations 1.70044 1.08361 1.28611 1.51591 1.25931 0.95700 1.03413 0.93352 0.85580 0.79527 0.77470 0.79654 1.18530 1.20262 1.16729 1.20753 0.89717 0.93050 1.52162 0.96503 1.18430 0.94953 0.86234 0.98881 1.23319 0.88639 0.97769 0.82901 1.68289 1.14152 1.12524 1.30531 1.23986 0.89080 0.88847 1.00405 1.23069 1.03137 1.03826 0.92571 1.20222 0.92169 0.89513 0.93799 1.19106 0.99373 0.91172 0.90643 1.22320 0.99083 1.01877 0.93227 1.22016 0.94977 0.95405 0.98185 1.22768 0.97499 0.95048 1.01153 1.23459 0.95375 1.01047 0.86791 1.67363 1.11610 1.07330 1.33219 1.68099 1.14452 1.10469 1.31401 0.92014 0.92981 0.93331 0.77259 0.80371 0.85283 0.81522 0.80070 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.96 44.57 27.47 68.60 1.88 46.46 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 7 C -0.52 -31.81 9.65 25.60 0.25 -31.56 16 8 H 0.02 1.16 7.98 -2.91 -0.02 1.14 16 9 C 0.05 2.80 4.47 29.10 0.13 2.93 16 10 C 0.34 16.42 6.83 138.78 0.95 17.37 16 11 N -0.54 -23.63 10.32 -188.01 -1.94 -25.57 16 12 C 0.14 4.70 11.30 84.66 0.96 5.66 16 13 C -0.20 -6.54 9.69 22.66 0.22 -6.32 16 14 C 0.19 7.15 6.76 41.99 0.28 7.43 16 15 C 0.13 4.24 6.73 41.98 0.28 4.52 16 16 C -0.14 -4.20 9.63 22.58 0.22 -3.98 16 17 C -0.08 -1.55 10.17 22.44 0.23 -1.33 16 18 C -0.14 -2.08 10.11 22.41 0.23 -1.85 16 19 C 0.09 1.62 11.18 84.74 0.95 2.57 16 20 N -0.48 -12.86 9.51 -184.82 -1.76 -14.62 16 21 N -0.53 -23.89 9.46 -176.99 -1.67 -25.57 16 22 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.05 2.61 7.20 -2.39 -0.02 2.59 16 24 H 0.05 2.40 7.57 -2.39 -0.02 2.38 16 25 H 0.21 4.69 8.06 -2.91 -0.02 4.67 16 26 H 0.18 4.51 7.63 -2.91 -0.02 4.49 16 27 H 0.13 4.26 7.57 -2.91 -0.02 4.24 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -78.85 271.94 3.06 -75.79 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.10 Total: 7.07 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.15 Total: -3.28 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.07 Total: -126.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -78.85 3.06 -75.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.258 kcal (2) G-P(sol) polarization free energy of solvation -78.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds