Wall clock time and date at job start Mon Mar 30 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47226 * 269.99801 * 3 2 1 5 5 H 1.48497 * 109.47352 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47242 * 150.00112 * 3 2 1 7 7 C 1.37875 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47669 * 180.02562 * 9 7 2 11 11 C 1.38070 * 119.56118 * 124.72510 * 10 9 7 12 12 C 1.39718 * 119.01829 * 180.26110 * 11 10 9 13 13 C 1.48396 * 120.90871 * 180.02562 * 12 11 10 14 14 C 1.39693 * 120.55217 * 184.98086 * 13 12 11 15 15 C 1.38392 * 118.28730 * 179.97438 * 14 13 12 16 16 N 1.32396 * 119.18707 * 359.97438 * 15 14 13 17 17 C 1.31831 * 121.04576 * 0.02562 * 16 15 14 18 18 N 1.31663 * 121.88270 * 359.73223 * 17 16 15 19 19 C 1.39769 * 118.18850 * 0.02562 * 12 11 10 20 20 C 1.38026 * 119.01604 * 0.02562 * 19 12 11 21 21 N 1.31874 * 119.55844 * 305.00718 * 10 9 7 22 22 H 0.97005 * 120.00232 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46770 * 60.00212 * 9 7 2 24 24 H 1.09000 * 109.47386 * 300.00778 * 9 7 2 25 25 H 1.07994 * 120.49038 * 0.26447 * 11 10 9 26 26 H 1.07995 * 120.85744 * 359.94590 * 14 13 12 27 27 H 1.08003 * 120.40764 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.05459 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.49369 * 179.97438 * 19 12 11 30 30 H 1.07998 * 119.55717 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.1528 -4.6069 0.9865 12 6 3.0699 -5.6610 0.9788 13 6 3.0247 -6.7184 2.0191 14 6 4.0065 -7.7109 2.0659 15 6 3.9191 -8.6737 3.0562 16 7 2.9166 -8.6228 3.9195 17 6 2.0056 -7.6725 3.8483 18 7 2.0509 -6.7334 2.9266 19 6 4.0311 -5.6925 -0.0354 20 6 4.0378 -4.6888 -0.9828 21 7 3.1532 -3.7115 -0.9401 22 1 -0.4851 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 1.3947 -4.5458 1.7532 26 1 4.8128 -7.7267 1.3477 27 1 4.6599 -9.4566 3.1243 28 1 1.2014 -7.6619 4.5689 29 1 4.7582 -6.4900 -0.0767 30 1 4.7769 -4.7043 -1.7701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259362847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:47 Heat of formation + Delta-G solvation = 77.984303 kcal Electronic energy + Delta-G solvation = -15583.248123 eV Core-core repulsion = 12957.458432 eV Total energy + Delta-G solvation = -2625.789691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12741 -39.50357 -34.62900 -33.50908 -32.81002 -31.35534 -30.75454 -27.63815 -25.24314 -24.67165 -23.33480 -22.39943 -20.69313 -17.62798 -17.44559 -16.33076 -16.04412 -15.53675 -15.08996 -14.95251 -14.81574 -14.28836 -13.68023 -13.47603 -13.12688 -12.61458 -12.10785 -11.54720 -11.39728 -11.15716 -10.91234 -10.69311 -10.64635 -10.15808 -9.83587 -9.43636 -9.40718 -8.91324 -8.75925 -8.46460 -8.21389 -6.01699 -4.02624 0.39352 0.83294 1.67121 1.99822 3.34652 3.40087 3.44372 3.70264 3.79552 4.00896 4.25424 4.37562 4.52395 4.77829 4.82851 4.97835 5.17402 5.34512 5.36487 5.40833 5.50175 5.63649 6.10461 6.13418 6.29550 6.43847 6.54549 6.89891 7.21022 7.47921 7.52425 7.94472 7.94869 8.29193 8.73013 9.00177 9.59678 11.09572 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.005074 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.173244 B = 5517.021716 C = 5939.481801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.058 3.942 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.032 4.032 13 C 0.229 3.771 14 C -0.220 4.220 15 C 0.148 3.852 16 N -0.530 5.530 17 C 0.299 3.701 18 N -0.509 5.509 19 C -0.179 4.179 20 C 0.095 3.905 21 N -0.459 5.459 22 H 0.262 0.738 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.169 0.831 28 H 0.198 0.802 29 H 0.128 0.872 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 -16.095 3.860 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.020 3.980 10 C 0.035 3.965 11 C -0.153 4.153 12 C -0.040 4.040 13 C 0.084 3.916 14 C -0.242 4.242 15 C -0.017 4.017 16 N -0.245 5.245 17 C 0.011 3.989 18 N -0.223 5.223 19 C -0.200 4.200 20 C -0.063 4.063 21 N -0.168 5.168 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.161 0.839 26 H 0.168 0.832 27 H 0.186 0.814 28 H 0.215 0.785 29 H 0.146 0.854 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.799 -15.321 3.916 17.213 hybrid contribution 1.175 0.157 0.077 1.188 sum 7.974 -15.163 3.993 17.591 Atomic orbital electron populations 1.69948 1.05983 1.26822 1.50892 1.24979 0.94896 0.99256 0.95322 0.86493 0.79702 0.83069 0.78157 1.20560 1.21251 1.19954 1.20970 0.93113 0.89447 1.50384 0.92222 1.18379 0.91809 0.88865 0.98899 1.22364 0.92738 0.94124 0.87229 1.22314 0.99112 0.93593 1.00306 1.18691 0.97309 0.94107 0.93922 1.20190 0.88825 0.91571 0.90978 1.22899 1.01813 0.97242 1.02221 1.23150 0.94221 0.95828 0.88498 1.68389 1.04050 1.25472 1.26555 1.24995 0.95389 0.84889 0.93609 1.68441 1.24184 1.25592 1.04110 1.21962 0.99897 1.01559 0.96616 1.22729 0.96758 0.89773 0.97031 1.67638 1.02611 1.22046 1.24503 0.92859 0.93791 0.94327 0.83944 0.83245 0.81407 0.78510 0.85387 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -14.24 8.91 -34.44 -0.31 -14.54 16 8 H 0.06 1.71 7.68 -52.49 -0.40 1.31 16 9 C 0.06 1.50 5.37 -29.04 -0.16 1.34 16 10 C 0.17 3.83 6.12 -82.64 -0.51 3.32 16 11 C -0.13 -2.55 9.27 -39.09 -0.36 -2.91 16 12 C -0.03 -0.51 5.91 -104.59 -0.62 -1.13 16 13 C 0.23 3.28 6.76 -82.59 -0.56 2.72 16 14 C -0.22 -2.36 9.55 -38.98 -0.37 -2.73 16 15 C 0.15 1.45 11.30 -17.25 -0.19 1.25 16 16 N -0.53 -6.22 10.43 -14.64 -0.15 -6.37 16 17 C 0.30 3.65 12.28 -92.24 -1.13 2.51 16 18 N -0.51 -7.54 9.71 -11.10 -0.11 -7.64 16 19 C -0.18 -2.54 9.51 -39.09 -0.37 -2.91 16 20 C 0.09 1.54 11.17 -17.60 -0.20 1.34 16 21 N -0.46 -9.76 9.94 -9.55 -0.09 -9.85 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.04 1.21 8.14 -51.92 -0.42 0.79 16 24 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 25 H 0.14 2.72 7.57 -52.49 -0.40 2.32 16 26 H 0.15 1.17 6.45 -52.49 -0.34 0.83 16 27 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.13 1.28 6.44 -52.49 -0.34 0.94 16 30 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -32.68 272.47 -8.12 -40.79 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -2.71 Total: -1.86 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.87 Total: -10.21 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.38 Total: -49.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.68 -8.12 -40.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.779 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds