Wall clock time and date at job start Mon Mar 30 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47226 * 269.99801 * 3 2 1 5 5 H 1.48497 * 109.47352 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47242 * 150.00112 * 3 2 1 7 7 C 1.37875 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47669 * 180.02562 * 9 7 2 11 11 C 1.38070 * 119.56118 * 124.72510 * 10 9 7 12 12 C 1.39718 * 119.01829 * 180.26110 * 11 10 9 13 13 C 1.48396 * 120.90871 * 180.02562 * 12 11 10 14 14 C 1.39693 * 120.55217 * 184.98086 * 13 12 11 15 15 C 1.38392 * 118.28730 * 179.97438 * 14 13 12 16 16 N 1.32396 * 119.18707 * 359.97438 * 15 14 13 17 17 C 1.31831 * 121.04576 * 0.02562 * 16 15 14 18 18 N 1.31663 * 121.88270 * 359.73223 * 17 16 15 19 19 C 1.39769 * 118.18850 * 0.02562 * 12 11 10 20 20 C 1.38026 * 119.01604 * 0.02562 * 19 12 11 21 21 N 1.31874 * 119.55844 * 305.00718 * 10 9 7 22 22 H 0.97005 * 120.00232 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46770 * 60.00212 * 9 7 2 24 24 H 1.09000 * 109.47386 * 300.00778 * 9 7 2 25 25 H 1.07994 * 120.49038 * 0.26447 * 11 10 9 26 26 H 1.07995 * 120.85744 * 359.94590 * 14 13 12 27 27 H 1.08003 * 120.40764 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.05459 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.49369 * 179.97438 * 19 12 11 30 30 H 1.07998 * 119.55717 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.1528 -4.6069 0.9865 12 6 3.0699 -5.6610 0.9788 13 6 3.0247 -6.7184 2.0191 14 6 4.0065 -7.7109 2.0659 15 6 3.9191 -8.6737 3.0562 16 7 2.9166 -8.6228 3.9195 17 6 2.0056 -7.6725 3.8483 18 7 2.0509 -6.7334 2.9266 19 6 4.0311 -5.6925 -0.0354 20 6 4.0378 -4.6888 -0.9828 21 7 3.1532 -3.7115 -0.9401 22 1 -0.4851 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 1.3947 -4.5458 1.7532 26 1 4.8128 -7.7267 1.3477 27 1 4.6599 -9.4566 3.1243 28 1 1.2014 -7.6619 4.5689 29 1 4.7582 -6.4900 -0.0767 30 1 4.7769 -4.7043 -1.7701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259362847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:47 Heat of formation + Delta-G solvation = 56.981084 kcal Electronic energy + Delta-G solvation = -15584.158891 eV Core-core repulsion = 12957.458432 eV Total energy + Delta-G solvation = -2626.700459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08459 -40.85083 -35.89555 -35.23576 -33.95470 -33.03793 -31.87710 -29.47281 -26.44877 -25.79590 -25.00102 -23.64039 -22.13160 -18.70022 -18.61475 -18.30846 -17.07599 -16.85266 -16.66937 -16.06852 -15.92072 -15.78200 -15.04167 -14.52779 -14.36441 -14.21236 -13.96545 -13.43776 -13.02593 -12.65649 -12.52400 -12.25668 -11.88760 -11.70344 -11.54450 -11.12062 -10.63838 -10.37265 -10.16756 -10.08360 -9.76745 -8.20910 -6.30582 -0.66416 0.01383 0.28551 0.80916 1.39223 1.41518 1.52263 2.40522 2.72686 2.79643 3.05530 3.13187 3.23379 3.39379 3.61762 3.87192 3.98250 4.09066 4.21720 4.30543 4.50453 4.63500 4.78363 4.89785 5.00252 5.19960 5.26830 5.37963 5.47203 5.71877 5.82894 5.99557 6.15451 6.77925 7.06304 7.27002 7.36827 8.90748 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.005074 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.173244 B = 5517.021716 C = 5939.481801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.065 3.935 10 C 0.139 3.861 11 C -0.150 4.150 12 C -0.026 4.026 13 C 0.195 3.805 14 C -0.201 4.201 15 C 0.153 3.847 16 N -0.538 5.538 17 C 0.290 3.710 18 N -0.546 5.546 19 C -0.149 4.149 20 C 0.091 3.909 21 N -0.500 5.500 22 H 0.266 0.734 23 H 0.010 0.990 24 H 0.016 0.984 25 H 0.127 0.873 26 H 0.188 0.812 27 H 0.215 0.785 28 H 0.217 0.783 29 H 0.187 0.813 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -18.294 3.981 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.004 3.996 11 C -0.171 4.171 12 C -0.035 4.035 13 C 0.051 3.949 14 C -0.223 4.223 15 C -0.012 4.012 16 N -0.252 5.252 17 C 0.002 3.998 18 N -0.261 5.261 19 C -0.170 4.170 20 C -0.067 4.067 21 N -0.210 5.210 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.145 0.855 26 H 0.206 0.794 27 H 0.231 0.769 28 H 0.233 0.767 29 H 0.204 0.796 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.109 -17.518 4.040 20.625 hybrid contribution 0.226 0.615 0.079 0.660 sum 10.335 -16.903 4.119 20.236 Atomic orbital electron populations 1.70073 1.07583 1.27947 1.51605 1.25909 0.95823 1.03093 0.94713 0.85398 0.78453 0.78338 0.78542 1.19675 1.20280 1.19269 1.21238 0.92939 0.90923 1.50422 0.92906 1.18039 0.92312 0.90626 0.96219 1.21636 0.93802 0.94387 0.89801 1.22083 1.00514 0.94826 0.99711 1.18983 0.96323 0.93304 0.94907 1.20190 0.90725 0.92684 0.91278 1.23254 1.01032 0.95379 1.02628 1.23953 0.93987 0.96180 0.87075 1.68480 1.04491 1.25038 1.27173 1.25396 0.96275 0.84604 0.93531 1.68367 1.25439 1.27044 1.05212 1.22502 0.99055 1.01537 0.93861 1.23454 0.95981 0.88830 0.98412 1.67454 1.03759 1.24861 1.24889 0.92549 0.97147 0.96546 0.85497 0.79450 0.76895 0.76658 0.79597 0.79048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.52 -30.94 8.91 25.60 0.23 -30.71 16 8 H 0.05 3.15 7.68 -2.91 -0.02 3.13 16 9 C 0.07 3.70 5.37 29.10 0.16 3.85 16 10 C 0.14 6.56 6.12 42.51 0.26 6.82 16 11 C -0.15 -6.10 9.27 22.59 0.21 -5.89 16 12 C -0.03 -0.82 5.91 -19.84 -0.12 -0.94 16 13 C 0.19 5.18 6.76 42.01 0.28 5.46 16 14 C -0.20 -3.35 9.55 22.66 0.22 -3.14 16 15 C 0.15 2.27 11.30 84.64 0.96 3.23 16 16 N -0.54 -11.05 10.43 -200.23 -2.09 -13.14 16 17 C 0.29 6.72 12.28 180.91 2.22 8.94 16 18 N -0.55 -15.97 9.71 -189.04 -1.83 -17.81 16 19 C -0.15 -3.65 9.51 22.59 0.21 -3.43 16 20 C 0.09 2.73 11.17 84.63 0.95 3.68 16 21 N -0.50 -21.60 9.94 -184.11 -1.83 -23.44 16 22 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 23 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.02 0.96 7.86 -2.39 -0.02 0.94 16 25 H 0.13 5.35 7.57 -2.91 -0.02 5.33 16 26 H 0.19 1.55 6.45 -2.91 -0.02 1.53 16 27 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.22 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.19 2.35 6.44 -2.91 -0.02 2.33 16 30 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -77.08 272.47 3.76 -73.33 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.16 Total: 1.99 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 6.04 Total: -11.52 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.47 Total: -111.72 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -77.08 3.76 -73.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.310 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds