Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99584 * 2 1 4 4 H 1.48489 * 109.47132 * 239.99701 * 3 2 1 5 5 H 1.48501 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46778 * 119.99738 * 3 2 1 7 7 C 1.37872 * 120.00567 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00268 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.38505 * 119.89416 * 124.99784 * 10 9 7 12 12 N 1.31968 * 120.12425 * 179.97438 * 11 10 9 13 13 C 1.32947 * 119.90920 * 0.02562 * 12 11 10 14 14 C 1.48360 * 120.10191 * 180.02562 * 13 12 11 15 15 C 1.39311 * 119.72803 * 359.71440 * 14 13 12 16 16 C 1.38441 * 119.06908 * 179.77421 * 15 14 13 17 17 C 1.38754 * 118.50231 * 0.49686 * 16 15 14 18 18 C 1.38303 * 119.36578 * 359.75177 * 17 16 15 19 19 N 1.31727 * 120.88757 * 359.97438 * 18 17 16 20 20 C 1.39420 * 119.79312 * 0.02562 * 13 12 11 21 21 N 1.32020 * 119.87557 * 359.97438 * 20 13 12 22 22 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47217 * 59.99301 * 9 7 2 24 24 H 1.09002 * 109.47050 * 299.99964 * 9 7 2 25 25 H 1.07999 * 119.93817 * 359.72722 * 11 10 9 26 26 H 1.07997 * 120.46520 * 0.02629 * 15 14 13 27 27 H 1.07999 * 120.74624 * 180.24750 * 16 15 14 28 28 H 1.08005 * 120.31939 * 179.72135 * 17 16 15 29 29 H 1.07993 * 119.55643 * 179.97438 * 18 17 16 30 30 H 1.08007 * 120.06180 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.1557 -4.6167 0.9842 12 7 3.0107 -5.6219 0.9882 13 6 3.9457 -5.7007 0.0464 14 6 4.9087 -6.8293 0.0465 15 6 4.8327 -7.8022 1.0407 16 6 5.7352 -8.8519 1.0250 17 6 6.6915 -8.8880 0.0203 18 6 6.7126 -7.8855 -0.9322 19 7 5.8383 -6.9008 -0.8971 20 6 4.0184 -4.7195 -0.9414 21 7 3.1589 -3.7175 -0.9375 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8896 24 1 0.6242 -2.5566 0.8903 25 1 1.3988 -4.5498 1.7516 26 1 4.0777 -7.7406 1.8105 27 1 5.6983 -9.6231 1.7802 28 1 7.4127 -9.6910 -0.0173 29 1 7.4558 -7.9103 -1.7154 30 1 4.7760 -4.7795 -1.7089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = 75.941321 kcal Electronic energy + Delta-G solvation = -15511.036811 eV Core-core repulsion = 12885.158529 eV Total energy + Delta-G solvation = -2625.878281 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76754 -39.71721 -34.48710 -33.19612 -32.76629 -32.10773 -30.58197 -27.66714 -24.81639 -24.39845 -22.96564 -22.68277 -21.08706 -17.62054 -17.25481 -16.29438 -16.03702 -15.63830 -15.34088 -14.65809 -14.61792 -14.35278 -13.64632 -13.37228 -13.09127 -12.34848 -12.03220 -11.84416 -11.57412 -11.02066 -10.88633 -10.73105 -10.53472 -10.06341 -9.96160 -9.68498 -9.64718 -9.36453 -8.52790 -8.34172 -8.07283 -6.08289 -4.10297 0.52657 1.17435 1.56122 1.89232 3.33430 3.36813 3.41088 3.71069 3.78814 4.35023 4.47435 4.56813 4.69797 4.84319 4.88067 4.96891 5.11154 5.20443 5.29831 5.41409 5.68041 5.78456 5.94619 5.99367 6.06995 6.17814 6.55881 6.94958 7.32096 7.39415 7.76252 7.85921 7.89872 8.19180 8.48290 8.91984 9.52828 11.02582 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049890 B = 0.004610 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.102591 B = 6072.535717 C = 6379.217573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.060 3.940 10 C 0.143 3.857 11 C 0.036 3.964 12 N -0.428 5.428 13 C 0.061 3.939 14 C 0.189 3.811 15 C -0.139 4.139 16 C -0.079 4.079 17 C -0.178 4.178 18 C 0.103 3.897 19 N -0.477 5.477 20 C 0.097 3.903 21 N -0.433 5.433 22 H 0.264 0.736 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 -16.480 1.420 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.004 3.996 11 C -0.127 4.127 12 N -0.143 5.143 13 C -0.078 4.078 14 C 0.052 3.948 15 C -0.160 4.160 16 C -0.105 4.105 17 C -0.198 4.198 18 C -0.056 4.056 19 N -0.187 5.187 20 C -0.064 4.064 21 N -0.147 5.147 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.187 0.813 26 H 0.163 0.837 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.846 -15.705 0.779 18.553 hybrid contribution 0.489 0.185 0.678 0.857 sum 10.336 -15.520 1.457 18.703 Atomic orbital electron populations 1.69926 1.05985 1.27129 1.50441 1.24966 0.94916 0.99298 0.95056 0.86533 0.79486 0.82528 0.78781 1.20045 1.21196 1.20241 1.20901 0.93105 0.89305 1.51120 0.92238 1.18392 0.91605 0.88552 0.99273 1.23499 0.92925 0.95121 0.88096 1.23634 0.98218 0.90925 0.99933 1.68043 1.01907 1.22628 1.21738 1.20014 0.96227 0.96049 0.95501 1.19201 0.92051 0.92523 0.91038 1.22177 0.99980 0.94100 0.99696 1.21582 0.93745 0.97469 0.97711 1.22189 1.00269 1.00768 0.96571 1.22686 0.95914 0.89442 0.97551 1.67461 1.03360 1.24325 1.23509 1.23901 0.96609 0.89065 0.96859 1.68599 1.02278 1.20104 1.23762 0.92668 0.93303 0.93864 0.81253 0.83663 0.84691 0.84812 0.82436 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.11 8.92 -34.44 -0.31 -14.42 16 8 H 0.06 1.69 7.68 -52.49 -0.40 1.28 16 9 C 0.06 1.49 5.39 -29.04 -0.16 1.33 16 10 C 0.14 3.15 6.13 -82.35 -0.50 2.65 16 11 C 0.04 0.68 10.84 -17.39 -0.19 0.49 16 12 N -0.43 -7.77 9.58 -9.59 -0.09 -7.86 16 13 C 0.06 1.08 6.73 -82.78 -0.56 0.53 16 14 C 0.19 2.89 6.73 -82.95 -0.56 2.34 16 15 C -0.14 -1.78 9.62 -39.11 -0.38 -2.15 16 16 C -0.08 -0.77 10.17 -39.32 -0.40 -1.17 16 17 C -0.18 -1.58 10.11 -39.37 -0.40 -1.98 16 18 C 0.10 1.09 11.18 -17.57 -0.20 0.89 16 19 N -0.48 -6.79 9.43 -9.78 -0.09 -6.89 16 20 C 0.10 1.84 10.76 -17.03 -0.18 1.66 16 21 N -0.43 -9.60 10.12 -9.01 -0.09 -9.69 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.04 1.06 7.88 -51.93 -0.41 0.66 16 25 H 0.17 2.73 7.95 -52.49 -0.42 2.32 16 26 H 0.15 1.81 7.55 -52.49 -0.40 1.42 16 27 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.17 2.86 7.54 -52.48 -0.40 2.46 16 LS Contribution 274.50 15.07 4.14 4.14 Total: -1.00 -31.22 274.50 -7.19 -38.41 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -2.85 Total: -1.24 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -3.92 Total: -8.28 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.46 Total: -49.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.22 -7.19 -38.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.353 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds