Wall clock time and date at job start Mon Mar 30 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.45939 * 2 1 4 4 C 1.38329 * 119.31236 * 179.97438 * 3 2 1 5 5 C 1.40038 * 118.28725 * 0.02562 * 4 3 2 6 6 C 1.47960 * 120.56183 * 180.27549 * 5 4 3 7 7 N 1.32935 * 118.91496 * 359.45353 * 6 5 4 8 8 C 1.31662 * 121.00979 * 179.75622 * 7 6 5 9 9 C 1.41305 * 118.87268 * 0.50234 * 8 7 6 10 10 C 1.41074 * 120.96643 * 179.77015 * 9 8 7 11 11 H 1.07997 * 119.99981 * 330.62889 * 10 9 8 12 12 C 1.40051 * 119.99717 * 150.62983 * 10 9 8 13 13 N 1.30781 * 119.99627 * 161.79272 * 12 10 9 14 14 Si 1.86799 * 119.99937 * 341.79037 * 12 10 9 15 15 H 1.48498 * 109.47021 * 95.40806 * 14 12 10 16 16 H 1.48503 * 109.47020 * 215.40179 * 14 12 10 17 17 H 1.48494 * 109.47366 * 335.40164 * 14 12 10 18 18 C 1.41305 * 118.06955 * 359.75098 * 9 8 7 19 19 N 1.31667 * 118.87084 * 0.02562 * 18 9 8 20 20 C 1.39574 * 118.88196 * 359.97438 * 5 4 3 21 21 N 1.31690 * 120.55818 * 0.02562 * 20 5 4 22 22 H 1.09000 * 109.47046 * 270.02017 * 1 2 3 23 23 H 1.08996 * 109.47131 * 30.01483 * 1 2 3 24 24 H 1.09004 * 109.47407 * 150.02072 * 1 2 3 25 25 H 1.08005 * 120.34259 * 359.96170 * 3 2 1 26 26 H 1.08001 * 120.85674 * 180.02562 * 4 3 2 27 27 H 1.08006 * 120.56229 * 180.27379 * 8 7 6 28 28 H 0.97000 * 119.99521 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.56863 * 179.97438 * 18 9 8 30 30 H 1.07993 * 119.72180 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2049 0.0000 4 6 3.5708 1.2014 0.0005 5 6 4.2313 -0.0335 0.0005 6 6 5.7095 -0.0960 0.0072 7 7 6.4009 1.0394 0.0021 8 6 7.7175 1.0319 0.0126 9 6 8.3927 -0.2094 0.0185 10 6 9.8022 -0.2689 0.0248 11 1 10.3781 0.5215 -0.4333 12 6 10.4545 -1.3531 0.6252 13 7 11.7050 -1.6050 0.3367 14 14 9.5385 -2.4392 1.8378 15 1 8.9963 -3.6257 1.1282 16 1 10.4699 -2.8840 2.9055 17 1 8.4212 -1.6716 2.4439 18 6 7.6152 -1.3893 0.0183 19 7 6.3026 -1.2857 0.0122 20 6 3.4716 -1.2043 0.0005 21 7 2.1558 -1.1488 0.0000 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6443 2.1384 -0.0006 26 1 4.1271 2.1271 0.0010 27 1 8.2719 1.9588 0.0128 28 1 12.1569 -2.3557 0.7528 29 1 8.0894 -2.3595 0.0223 30 1 3.9669 -2.1640 0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259633494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:29 Heat of formation + Delta-G solvation = 59.117783 kcal Electronic energy + Delta-G solvation = -15789.299508 eV Core-core repulsion = 13162.691703 eV Total energy + Delta-G solvation = -2626.607805 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95686 -39.04244 -34.60113 -33.05928 -32.56797 -31.81623 -31.02484 -27.90511 -25.31491 -23.79159 -22.83823 -22.01699 -20.94182 -18.05630 -17.00710 -16.49320 -15.75784 -15.29238 -15.06478 -14.26673 -14.11961 -13.59165 -13.39888 -12.90533 -12.75735 -12.64835 -12.36787 -12.18469 -12.01710 -11.48870 -11.44105 -11.18962 -10.46027 -9.96145 -9.75401 -9.58029 -9.45239 -9.08561 -8.90160 -8.08268 -7.81042 -7.45034 -4.91876 1.17076 1.70411 2.33266 2.37378 2.86355 2.95819 3.03863 3.61445 4.03399 4.39067 4.61787 4.93224 5.07705 5.20289 5.24128 5.44357 5.59582 5.67250 5.72869 5.80519 5.86272 6.07836 6.21170 6.27287 6.32753 6.50629 6.66750 6.82400 7.08000 7.17103 7.39373 7.72809 7.83574 8.14404 8.36995 8.46174 9.35542 9.51448 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050330 B = 0.005611 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.197769 B = 4989.060786 C = 5391.243697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.096 3.904 3 C -0.174 4.174 4 C -0.062 4.062 5 C -0.031 4.031 6 C 0.163 3.837 7 N -0.472 5.472 8 C 0.041 3.959 9 C -0.009 4.009 10 C -0.392 4.392 11 H 0.104 0.896 12 C 0.080 3.920 13 N -0.770 5.770 14 Si 0.910 3.090 15 H -0.258 1.258 16 H -0.279 1.279 17 H -0.246 1.246 18 C 0.006 3.994 19 N -0.465 5.465 20 C 0.114 3.886 21 N -0.487 5.487 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.296 0.704 29 H 0.142 0.858 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 1.970 1.099 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 C -0.194 4.194 4 C -0.089 4.089 5 C -0.035 4.035 6 C -0.093 4.093 7 N -0.184 5.184 8 C -0.134 4.134 9 C -0.016 4.016 10 C -0.420 4.420 11 H 0.122 0.878 12 C -0.145 4.145 13 N -0.390 5.390 14 Si 0.735 3.265 15 H -0.184 1.184 16 H -0.205 1.205 17 H -0.169 1.169 18 C -0.166 4.166 19 N -0.177 5.177 20 C -0.045 4.045 21 N -0.197 5.197 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.146 0.854 26 H 0.158 0.842 27 H 0.165 0.835 28 H 0.107 0.893 29 H 0.159 0.841 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.023 1.118 1.084 11.133 hybrid contribution 1.612 0.241 0.473 1.698 sum -9.411 1.359 1.557 9.635 Atomic orbital electron populations 1.20609 0.89550 1.02793 1.02428 1.21195 0.96599 0.88718 0.97673 1.21775 0.94655 0.98759 1.04216 1.21649 0.93526 0.98358 0.95408 1.19129 0.90675 0.94063 0.99603 1.19754 0.91964 0.84409 1.13221 1.67537 1.09473 1.31382 1.09973 1.22912 0.88746 0.96971 1.04817 1.19379 0.95556 0.93921 0.92790 1.19600 0.89815 1.05326 1.27274 0.87799 1.26363 0.95106 0.96497 0.96541 1.69630 1.11483 1.24836 1.33073 0.86295 0.80047 0.80310 0.79846 1.18368 1.20507 1.16906 1.22799 0.88622 0.97785 1.07443 1.67471 1.12583 1.28215 1.09391 1.22883 0.88166 0.98541 0.94950 1.67465 1.09982 1.29024 1.13190 0.91065 0.91265 0.90962 0.85392 0.84188 0.83450 0.89262 0.84086 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.16 36.00 0.37 -0.71 16 2 C 0.10 1.49 6.78 -82.50 -0.56 0.93 16 3 C -0.17 -2.60 9.72 -39.49 -0.38 -2.98 16 4 C -0.06 -1.10 9.68 -38.87 -0.38 -1.47 16 5 C -0.03 -0.63 5.90 -104.74 -0.62 -1.24 16 6 C 0.16 3.77 7.56 -156.52 -1.18 2.58 16 7 N -0.47 -10.80 9.47 -10.55 -0.10 -10.90 16 8 C 0.04 0.91 11.11 -16.46 -0.18 0.73 16 9 C -0.01 -0.21 5.13 -106.49 -0.55 -0.76 16 10 C -0.39 -9.30 9.61 -37.83 -0.36 -9.67 16 11 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.08 1.83 5.42 -17.32 -0.09 1.73 16 13 N -0.77 -17.82 13.93 55.55 0.77 -17.05 16 14 Si 0.91 18.70 24.53 -169.99 -4.17 14.53 16 15 H -0.26 -5.15 6.70 56.52 0.38 -4.78 16 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.25 -5.44 6.85 56.52 0.39 -5.06 16 18 C 0.01 0.14 8.47 -16.46 -0.14 0.00 16 19 N -0.47 -11.08 9.42 -10.55 -0.10 -11.18 16 20 C 0.11 2.21 10.74 -17.11 -0.18 2.02 16 21 N -0.49 -8.79 10.25 -9.12 -0.09 -8.89 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 26 H 0.14 2.38 7.59 -52.49 -0.40 1.98 16 27 H 0.15 2.91 8.06 -52.48 -0.42 2.49 16 28 H 0.30 6.13 8.29 -40.82 -0.34 5.79 16 29 H 0.14 3.20 4.78 -52.49 -0.25 2.95 16 30 H 0.16 3.11 7.51 -52.49 -0.39 2.71 16 LS Contribution 265.25 15.07 4.00 4.00 Total: -1.00 -26.59 265.25 -6.70 -33.29 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.75 Total: 5.03 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -4.26 Total: -8.84 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.48 Total: -48.01 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.17 Total: 14.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.59 -6.70 -33.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259633494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.409 kcal (2) G-P(sol) polarization free energy of solvation -26.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds