Wall clock time and date at job start Mon Mar 30 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.45939 * 2 1 4 4 C 1.38329 * 119.31236 * 179.97438 * 3 2 1 5 5 C 1.40038 * 118.28725 * 0.02562 * 4 3 2 6 6 C 1.47960 * 120.56183 * 180.27549 * 5 4 3 7 7 N 1.32935 * 118.91496 * 359.45353 * 6 5 4 8 8 C 1.31662 * 121.00979 * 179.75622 * 7 6 5 9 9 C 1.41305 * 118.87268 * 0.50234 * 8 7 6 10 10 C 1.41074 * 120.96643 * 179.77015 * 9 8 7 11 11 H 1.07997 * 119.99981 * 330.62889 * 10 9 8 12 12 C 1.40051 * 119.99717 * 150.62983 * 10 9 8 13 13 N 1.30781 * 119.99627 * 161.79272 * 12 10 9 14 14 Si 1.86799 * 119.99937 * 341.79037 * 12 10 9 15 15 H 1.48498 * 109.47021 * 95.40806 * 14 12 10 16 16 H 1.48503 * 109.47020 * 215.40179 * 14 12 10 17 17 H 1.48494 * 109.47366 * 335.40164 * 14 12 10 18 18 C 1.41305 * 118.06955 * 359.75098 * 9 8 7 19 19 N 1.31667 * 118.87084 * 0.02562 * 18 9 8 20 20 C 1.39574 * 118.88196 * 359.97438 * 5 4 3 21 21 N 1.31690 * 120.55818 * 0.02562 * 20 5 4 22 22 H 1.09000 * 109.47046 * 270.02017 * 1 2 3 23 23 H 1.08996 * 109.47131 * 30.01483 * 1 2 3 24 24 H 1.09004 * 109.47407 * 150.02072 * 1 2 3 25 25 H 1.08005 * 120.34259 * 359.96170 * 3 2 1 26 26 H 1.08001 * 120.85674 * 180.02562 * 4 3 2 27 27 H 1.08006 * 120.56229 * 180.27379 * 8 7 6 28 28 H 0.97000 * 119.99521 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.56863 * 179.97438 * 18 9 8 30 30 H 1.07993 * 119.72180 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2049 0.0000 4 6 3.5708 1.2014 0.0005 5 6 4.2313 -0.0335 0.0005 6 6 5.7095 -0.0960 0.0072 7 7 6.4009 1.0394 0.0021 8 6 7.7175 1.0319 0.0126 9 6 8.3927 -0.2094 0.0185 10 6 9.8022 -0.2689 0.0248 11 1 10.3781 0.5215 -0.4333 12 6 10.4545 -1.3531 0.6252 13 7 11.7050 -1.6050 0.3367 14 14 9.5385 -2.4392 1.8378 15 1 8.9963 -3.6257 1.1282 16 1 10.4699 -2.8840 2.9055 17 1 8.4212 -1.6716 2.4439 18 6 7.6152 -1.3893 0.0183 19 7 6.3026 -1.2857 0.0122 20 6 3.4716 -1.2043 0.0005 21 7 2.1558 -1.1488 0.0000 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6443 2.1384 -0.0006 26 1 4.1271 2.1271 0.0010 27 1 8.2719 1.9588 0.0128 28 1 12.1569 -2.3557 0.7528 29 1 8.0894 -2.3595 0.0223 30 1 3.9669 -2.1640 0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259633494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:29 Heat of formation + Delta-G solvation = 43.246429 kcal Electronic energy + Delta-G solvation = -15789.987741 eV Core-core repulsion = 13162.691703 eV Total energy + Delta-G solvation = -2627.296038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52351 -40.60317 -36.33024 -34.53365 -34.32933 -33.15411 -32.62664 -29.24841 -26.89154 -25.44963 -24.39446 -23.52799 -22.44433 -19.83899 -18.61770 -18.16147 -17.27673 -16.80935 -16.49929 -15.71897 -15.58562 -15.09318 -15.06464 -14.64766 -14.21233 -14.14091 -13.86691 -13.40064 -13.14624 -12.99889 -12.96541 -12.64328 -12.13668 -11.69849 -11.49842 -11.37861 -10.92341 -10.45836 -10.37159 -9.85954 -9.41537 -9.19738 -6.72754 -0.32711 0.35144 0.54140 0.70889 1.20091 1.30964 1.36497 1.94845 2.39705 2.86878 3.19423 3.44827 3.49174 3.61459 3.92831 4.04934 4.12007 4.29840 4.41713 4.53170 4.64744 4.81736 4.84934 4.88021 4.91819 5.20712 5.23986 5.25090 5.50066 5.63203 5.83441 5.91200 6.03242 6.35674 6.62325 7.05924 7.55269 7.82843 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050330 B = 0.005611 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.197769 B = 4989.060786 C = 5391.243697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.101 3.899 3 C -0.163 4.163 4 C -0.061 4.061 5 C -0.069 4.069 6 C 0.163 3.837 7 N -0.478 5.478 8 C 0.038 3.962 9 C -0.019 4.019 10 C -0.415 4.415 11 H 0.091 0.909 12 C 0.060 3.940 13 N -0.794 5.794 14 Si 0.952 3.048 15 H -0.251 1.251 16 H -0.258 1.258 17 H -0.273 1.273 18 C -0.009 4.009 19 N -0.480 5.480 20 C 0.108 3.892 21 N -0.504 5.504 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.173 0.827 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.308 0.692 29 H 0.147 0.853 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 2.743 1.461 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.037 4.037 3 C -0.182 4.182 4 C -0.088 4.088 5 C -0.073 4.073 6 C -0.095 4.095 7 N -0.189 5.189 8 C -0.137 4.137 9 C -0.027 4.027 10 C -0.444 4.444 11 H 0.109 0.891 12 C -0.162 4.162 13 N -0.416 5.416 14 Si 0.776 3.224 15 H -0.176 1.176 16 H -0.183 1.183 17 H -0.198 1.198 18 C -0.180 4.180 19 N -0.192 5.192 20 C -0.051 4.051 21 N -0.214 5.214 22 H 0.107 0.893 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.191 0.809 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.120 0.880 29 H 0.164 0.836 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.518 1.870 1.441 13.722 hybrid contribution 2.109 0.106 0.332 2.137 sum -11.409 1.976 1.773 11.714 Atomic orbital electron populations 1.20772 0.85980 1.04449 1.04013 1.22076 0.98893 0.88124 0.94602 1.22217 0.93476 1.00505 1.02014 1.21835 0.94958 0.97373 0.94658 1.19201 0.89338 0.95714 1.03056 1.20432 0.93536 0.84242 1.11319 1.67641 1.09461 1.31236 1.10593 1.23368 0.88969 0.97686 1.03661 1.19480 0.95610 0.94376 0.93185 1.19555 0.89881 1.05949 1.28977 0.89105 1.26746 0.95487 0.96928 0.97075 1.69611 1.12089 1.25875 1.34022 0.85674 0.78699 0.79155 0.78919 1.17554 1.18303 1.19751 1.22960 0.88894 0.98222 1.07950 1.67536 1.12585 1.28817 1.10274 1.22754 0.88934 0.97996 0.95383 1.67545 1.09145 1.30639 1.14095 0.89298 0.88117 0.90896 0.80930 0.83787 0.81114 0.88023 0.83624 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 10.16 71.23 0.72 -0.94 16 2 C 0.10 2.78 6.78 42.58 0.29 3.07 16 3 C -0.16 -4.22 9.72 22.33 0.22 -4.00 16 4 C -0.06 -2.03 9.68 22.73 0.22 -1.81 16 5 C -0.07 -2.78 5.90 -19.94 -0.12 -2.90 16 6 C 0.16 7.57 7.56 137.23 1.04 8.61 16 7 N -0.48 -21.82 9.47 -187.28 -1.77 -23.59 16 8 C 0.04 1.71 11.11 85.47 0.95 2.66 16 9 C -0.02 -0.93 5.13 -21.07 -0.11 -1.03 16 10 C -0.42 -20.19 9.61 23.41 0.22 -19.97 16 11 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 12 C 0.06 2.80 5.42 85.29 0.46 3.26 16 13 N -0.79 -36.96 13.93 21.85 0.30 -36.65 16 14 Si 0.95 38.55 24.53 68.60 1.68 40.23 16 15 H -0.25 -9.74 6.70 99.48 0.67 -9.07 16 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 17 H -0.27 -12.20 6.85 99.48 0.68 -11.52 16 18 C -0.01 -0.46 8.47 85.47 0.72 0.27 16 19 N -0.48 -23.28 9.42 -187.28 -1.76 -25.05 16 20 C 0.11 4.15 10.74 85.04 0.91 5.06 16 21 N -0.50 -17.36 10.25 -182.76 -1.87 -19.23 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.10 1.18 8.07 -2.39 -0.02 1.16 16 24 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 25 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 26 H 0.14 4.61 7.59 -2.91 -0.02 4.58 16 27 H 0.17 6.71 8.06 -2.91 -0.02 6.68 16 28 H 0.31 12.65 8.29 -92.71 -0.77 11.88 16 29 H 0.15 6.73 4.78 -2.91 -0.01 6.72 16 30 H 0.15 5.97 7.51 -2.91 -0.02 5.95 16 Total: -1.00 -57.60 265.25 3.21 -54.39 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.10 Total: 17.62 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.54 Total: -7.73 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -5.11 Total: -104.52 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.68 Total: 40.23 kcal Total: -57.60 3.21 -54.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259633494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.639 kcal (2) G-P(sol) polarization free energy of solvation -57.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds