Wall clock time and date at job start Mon Mar 30 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48493 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99646 * 3 2 1 6 6 H 1.48504 * 109.47198 * 59.99314 * 3 2 1 7 7 C 1.37884 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46811 * 179.97438 * 9 7 2 11 11 N 1.32124 * 119.44567 * 90.00131 * 10 9 7 12 12 C 1.32276 * 119.62807 * 179.97438 * 11 10 9 13 13 C 1.39869 * 118.61504 * 0.02562 * 12 11 10 14 14 C 1.48327 * 120.54619 * 180.02562 * 13 12 11 15 15 C 1.39368 * 120.12387 * 359.71448 * 14 13 12 16 16 C 1.38010 * 119.87379 * 179.70009 * 15 14 13 17 17 C 1.38330 * 120.12425 * 0.58499 * 16 15 14 18 18 C 1.38324 * 120.24658 * 359.71355 * 17 16 15 19 19 C 1.38007 * 120.12798 * 359.97438 * 18 17 16 20 20 N 1.32999 * 118.90807 * 0.02562 * 13 12 11 21 21 N 1.28740 * 120.25689 * 359.97438 * 20 13 12 22 22 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47334 * 59.99592 * 9 7 2 24 24 H 1.08999 * 109.46948 * 299.99740 * 9 7 2 25 25 H 1.07993 * 120.69637 * 179.97438 * 12 11 10 26 26 H 1.08006 * 120.06170 * 0.02562 * 15 14 13 27 27 H 1.08000 * 119.93805 * 180.29905 * 16 15 14 28 28 H 1.08001 * 119.87178 * 179.74055 * 17 16 15 29 29 H 1.08003 * 119.93683 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.06629 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6523 -4.1383 1.1511 12 6 3.5115 -5.1441 1.1553 13 6 3.9494 -5.6561 -0.0704 14 6 4.9120 -6.7838 -0.1157 15 6 5.3939 -7.3399 1.0679 16 6 6.2846 -8.3930 1.0198 17 6 6.7084 -8.8887 -0.2002 18 6 6.2381 -8.3365 -1.3780 19 6 5.3423 -7.2873 -1.3419 20 7 3.4885 -5.1154 -1.1947 21 7 2.6528 -4.1371 -1.1489 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 3.8681 -5.5606 2.0857 26 1 5.0669 -6.9510 2.0209 27 1 6.6550 -8.8280 1.9363 28 1 7.4088 -9.7102 -0.2330 29 1 6.5720 -8.7276 -2.3277 30 1 4.9754 -6.8572 -2.2621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:06 Heat of formation + Delta-G solvation = 89.057967 kcal Electronic energy + Delta-G solvation = -15519.746891 eV Core-core repulsion = 12894.437390 eV Total energy + Delta-G solvation = -2625.309501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32020 -39.08076 -34.75843 -34.05191 -32.86291 -31.11273 -30.57847 -28.07298 -25.44729 -24.79591 -22.68124 -22.28494 -21.40648 -18.16338 -17.50370 -16.61169 -16.08449 -15.69035 -15.01946 -14.71404 -14.54181 -14.06435 -13.55413 -13.03371 -12.90767 -12.31762 -12.01672 -11.70940 -11.42772 -11.22942 -11.18868 -11.05857 -10.77361 -10.71739 -10.32930 -9.95041 -9.41513 -9.09990 -8.77292 -8.51198 -8.38740 -6.15514 -4.19522 0.49372 1.06402 1.25984 1.77383 3.26756 3.33694 3.38733 3.61571 4.02728 4.11531 4.23278 4.32858 4.41505 4.66855 4.80467 4.89651 5.05104 5.21018 5.26700 5.34803 5.50275 5.65468 5.83481 5.93708 6.26807 6.34610 6.42323 6.52772 6.78868 7.22010 7.32374 7.57359 7.77036 8.07091 8.79758 9.01540 9.43419 10.95318 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049179 B = 0.004529 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.212695 B = 6180.766398 C = 6193.683279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.080 3.920 10 C 0.299 3.701 11 N -0.460 5.460 12 C 0.127 3.873 13 C 0.014 3.986 14 C -0.029 4.029 15 C -0.103 4.103 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.083 4.083 20 N -0.187 5.187 21 N -0.274 5.274 22 H 0.265 0.735 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.176 0.824 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 -16.275 1.959 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.040 3.960 10 C 0.034 3.966 11 N -0.180 5.180 12 C -0.051 4.051 13 C -0.133 4.133 14 C -0.032 4.032 15 C -0.123 4.123 16 C -0.140 4.140 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.102 4.102 20 N -0.037 5.037 21 N -0.121 5.121 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.193 0.807 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.607 -15.635 1.042 18.922 hybrid contribution 0.830 0.528 0.836 1.291 sum 11.437 -15.106 1.878 19.040 Atomic orbital electron populations 1.69941 1.05983 1.27180 1.49593 1.24924 0.94972 0.99280 0.94668 0.86347 0.79930 0.82867 0.77784 1.19771 1.20641 1.20699 1.20775 0.92820 0.89043 1.52416 0.92667 1.18342 0.91005 0.86309 1.00338 1.26012 0.92892 0.93810 0.83853 1.69110 1.09504 1.08227 1.31149 1.24159 0.91219 0.91179 0.98498 1.21915 0.99435 0.98445 0.93511 1.18227 0.96417 0.94309 0.94204 1.21202 0.97310 0.96412 0.97338 1.21036 0.97998 0.96822 0.98103 1.21264 0.99626 0.99767 0.92606 1.21148 0.97745 0.96692 0.98510 1.21373 0.95695 0.95297 0.97856 1.73806 1.02753 1.02337 1.24824 1.73747 1.07129 1.04827 1.26427 0.92513 0.92690 0.92762 0.80732 0.85445 0.85612 0.85961 0.85651 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.51 9.09 -34.44 -0.31 -14.82 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.08 2.09 5.43 -29.03 -0.16 1.94 16 10 C 0.30 7.05 6.90 -156.74 -1.08 5.96 16 11 N -0.46 -9.69 10.44 -10.31 -0.11 -9.80 16 12 C 0.13 2.11 10.70 -16.75 -0.18 1.93 16 13 C 0.01 0.23 6.81 -82.60 -0.56 -0.33 16 14 C -0.03 -0.39 5.88 -104.90 -0.62 -1.01 16 15 C -0.10 -1.09 9.44 -39.24 -0.37 -1.46 16 16 C -0.12 -1.08 10.03 -39.63 -0.40 -1.48 16 17 C -0.11 -1.00 10.04 -39.52 -0.40 -1.39 16 18 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 19 C -0.08 -1.04 9.59 -39.25 -0.38 -1.42 16 20 N -0.19 -3.75 10.80 33.43 0.36 -3.39 16 21 N -0.27 -6.31 11.47 32.43 0.37 -5.94 16 22 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 24 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.18 2.03 6.32 -52.49 -0.33 1.70 16 26 H 0.13 1.07 6.27 -52.48 -0.33 0.74 16 27 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.14 1.77 7.58 -52.49 -0.40 1.37 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -31.57 272.93 -7.21 -38.77 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -2.71 Total: -3.25 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -4.95 Total: -11.99 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 1.36 Total: -44.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.57 -7.21 -38.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.832 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds