Wall clock time and date at job start Mon Mar 30 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48493 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99646 * 3 2 1 6 6 H 1.48504 * 109.47198 * 59.99314 * 3 2 1 7 7 C 1.37884 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46811 * 179.97438 * 9 7 2 11 11 N 1.32124 * 119.44567 * 90.00131 * 10 9 7 12 12 C 1.32276 * 119.62807 * 179.97438 * 11 10 9 13 13 C 1.39869 * 118.61504 * 0.02562 * 12 11 10 14 14 C 1.48327 * 120.54619 * 180.02562 * 13 12 11 15 15 C 1.39368 * 120.12387 * 359.71448 * 14 13 12 16 16 C 1.38010 * 119.87379 * 179.70009 * 15 14 13 17 17 C 1.38330 * 120.12425 * 0.58499 * 16 15 14 18 18 C 1.38324 * 120.24658 * 359.71355 * 17 16 15 19 19 C 1.38007 * 120.12798 * 359.97438 * 18 17 16 20 20 N 1.32999 * 118.90807 * 0.02562 * 13 12 11 21 21 N 1.28740 * 120.25689 * 359.97438 * 20 13 12 22 22 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47334 * 59.99592 * 9 7 2 24 24 H 1.08999 * 109.46948 * 299.99740 * 9 7 2 25 25 H 1.07993 * 120.69637 * 179.97438 * 12 11 10 26 26 H 1.08006 * 120.06170 * 0.02562 * 15 14 13 27 27 H 1.08000 * 119.93805 * 180.29905 * 16 15 14 28 28 H 1.08001 * 119.87178 * 179.74055 * 17 16 15 29 29 H 1.08003 * 119.93683 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.06629 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6523 -4.1383 1.1511 12 6 3.5115 -5.1441 1.1553 13 6 3.9494 -5.6561 -0.0704 14 6 4.9120 -6.7838 -0.1157 15 6 5.3939 -7.3399 1.0679 16 6 6.2846 -8.3930 1.0198 17 6 6.7084 -8.8887 -0.2002 18 6 6.2381 -8.3365 -1.3780 19 6 5.3423 -7.2873 -1.3419 20 7 3.4885 -5.1154 -1.1947 21 7 2.6528 -4.1371 -1.1489 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 3.8681 -5.5606 2.0857 26 1 5.0669 -6.9510 2.0209 27 1 6.6550 -8.8280 1.9363 28 1 7.4088 -9.7102 -0.2330 29 1 6.5720 -8.7276 -2.3277 30 1 4.9754 -6.8572 -2.2621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:06 Heat of formation + Delta-G solvation = 69.096426 kcal Electronic energy + Delta-G solvation = -15520.612488 eV Core-core repulsion = 12894.437390 eV Total energy + Delta-G solvation = -2626.175098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.83395 -39.95054 -36.39765 -35.65785 -34.61385 -32.03053 -31.90890 -29.71478 -26.86594 -26.52500 -24.24518 -23.20012 -22.63734 -19.64620 -18.76047 -18.48093 -17.48354 -16.76859 -16.65271 -16.32381 -15.55528 -14.97645 -14.70964 -14.47114 -14.22135 -13.82920 -13.75785 -13.21026 -13.17060 -12.78406 -12.66629 -12.60393 -12.17627 -11.99962 -11.90691 -11.88858 -11.20575 -10.69562 -10.29640 -9.87644 -9.49262 -8.30357 -6.43408 -0.76052 -0.41989 0.48677 0.66875 1.38096 1.39064 1.51893 2.30776 2.47121 2.66536 2.76130 2.91498 2.96705 3.04514 3.62434 3.79984 4.07649 4.18913 4.23166 4.32424 4.55604 4.66517 4.83513 4.98252 5.13904 5.15349 5.23837 5.50944 5.55105 5.57918 5.59100 5.92000 5.96766 6.04818 6.60981 7.23826 7.44555 8.81337 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049179 B = 0.004529 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.212695 B = 6180.766398 C = 6193.683279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.044 0.956 9 C 0.091 3.909 10 C 0.275 3.725 11 N -0.480 5.480 12 C 0.139 3.861 13 C 0.037 3.963 14 C -0.065 4.065 15 C -0.097 4.097 16 C -0.119 4.119 17 C -0.100 4.100 18 C -0.128 4.128 19 C -0.100 4.100 20 N -0.217 5.217 21 N -0.306 5.306 22 H 0.271 0.729 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.232 0.768 26 H 0.152 0.848 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.108 -18.224 3.571 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.062 0.938 9 C 0.051 3.949 10 C 0.008 3.992 11 N -0.199 5.199 12 C -0.040 4.040 13 C -0.112 4.112 14 C -0.068 4.068 15 C -0.116 4.116 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.146 4.146 19 C -0.119 4.119 20 N -0.064 5.064 21 N -0.152 5.152 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.248 0.752 26 H 0.170 0.830 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.480 -17.584 2.612 22.310 hybrid contribution 0.136 0.807 0.378 0.902 sum 13.616 -16.776 2.989 21.812 Atomic orbital electron populations 1.70041 1.07434 1.28487 1.49892 1.25827 0.95894 1.02878 0.93848 0.85286 0.78347 0.78239 0.78455 1.19711 1.19665 1.19307 1.20981 0.92447 0.90583 1.53090 0.93766 1.17926 0.91295 0.87517 0.98157 1.25275 0.94219 0.94520 0.85183 1.69011 1.10975 1.09890 1.30060 1.25051 0.89139 0.89246 1.00524 1.22587 0.97950 0.97904 0.92712 1.18275 0.97761 0.94702 0.96020 1.21521 0.96795 0.96320 0.96977 1.21494 0.96768 0.95754 0.99666 1.21759 0.98620 0.99520 0.91917 1.21417 0.96949 0.95785 1.00401 1.21409 0.96886 0.96556 0.97073 1.73721 1.03520 1.02553 1.26624 1.73627 1.08612 1.06344 1.26580 0.91953 0.95225 0.94563 0.75223 0.83044 0.82079 0.82550 0.83601 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.29 21.45 0.28 -54.70 16 2 C 0.02 0.88 5.46 84.66 0.46 1.35 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -31.55 9.09 25.60 0.23 -31.32 16 8 H 0.04 2.65 7.74 -2.91 -0.02 2.62 16 9 C 0.09 5.10 5.43 29.10 0.16 5.26 16 10 C 0.27 13.64 6.90 138.59 0.96 14.60 16 11 N -0.48 -20.53 10.44 -186.54 -1.95 -22.48 16 12 C 0.14 4.42 10.70 85.02 0.91 5.32 16 13 C 0.04 1.24 6.81 42.05 0.29 1.52 16 14 C -0.06 -1.63 5.88 -20.05 -0.12 -1.75 16 15 C -0.10 -1.65 9.44 22.49 0.21 -1.43 16 16 C -0.12 -1.47 10.03 22.24 0.22 -1.25 16 17 C -0.10 -1.24 10.04 22.31 0.22 -1.02 16 18 C -0.13 -2.14 10.03 22.24 0.22 -1.92 16 19 C -0.10 -2.40 9.59 22.49 0.22 -2.19 16 20 N -0.22 -9.04 10.80 -48.15 -0.52 -9.56 16 21 N -0.31 -14.96 11.47 -51.30 -0.59 -15.55 16 22 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.23 4.42 6.32 -2.91 -0.02 4.40 16 26 H 0.15 1.74 6.27 -2.91 -0.02 1.72 16 27 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 29 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.12 3.16 7.58 -2.91 -0.02 3.13 16 Total: -1.00 -73.21 272.93 4.40 -68.81 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.16 Total: -0.59 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 3.99 Total: -12.83 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -2.77 Total: -102.29 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.21 4.40 -68.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.904 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds