Wall clock time and date at job start Mon Mar 30 2020 03:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36597 * 125.45957 * 2 1 4 4 C 1.34435 * 108.85350 * 179.81904 * 3 2 1 5 5 C 1.42227 * 107.34351 * 0.42643 * 4 3 2 6 6 C 1.35683 * 125.45415 * 180.29670 * 2 1 3 7 7 C 1.50931 * 144.15192 * 0.02562 * 6 2 1 8 8 C 1.50974 * 105.87630 * 179.97438 * 7 6 2 9 9 N 1.31158 * 132.33405 * 180.02562 * 8 7 6 10 10 C 1.34211 * 119.85136 * 179.97438 * 9 8 7 11 11 C 1.40848 * 120.18621 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00154 * 173.71164 * 11 10 9 13 13 C 1.40052 * 119.99693 * 353.71763 * 11 10 9 14 14 N 1.30749 * 120.00501 * 6.27595 * 13 11 10 15 15 Si 1.86811 * 119.99797 * 186.27418 * 13 11 10 16 16 H 1.48494 * 109.46838 * 90.00037 * 15 13 11 17 17 H 1.48500 * 109.47024 * 210.00222 * 15 13 11 18 18 H 1.48497 * 109.46932 * 330.00255 * 15 13 11 19 19 C 1.41054 * 119.63025 * 359.97438 * 10 9 8 20 20 N 1.31391 * 120.06297 * 0.02562 * 19 10 9 21 21 C 1.33756 * 120.22562 * 359.95893 * 20 19 10 22 22 H 1.08997 * 109.47642 * 269.69818 * 1 2 3 23 23 H 1.09002 * 109.46960 * 149.69507 * 1 2 3 24 24 H 1.08996 * 109.46809 * 29.70361 * 1 2 3 25 25 H 1.07997 * 125.57087 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.33329 * 180.16435 * 4 3 2 27 27 H 1.08998 * 110.17349 * 299.10473 * 7 6 2 28 28 H 1.09004 * 110.16664 * 60.90723 * 7 6 2 29 29 H 0.96998 * 120.00499 * 179.97438 * 14 13 11 30 30 H 1.08001 * 119.96445 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1126 0.0000 4 6 3.5457 0.7284 0.0040 5 6 3.5640 -0.6937 -0.0034 6 6 2.2520 -1.1052 -0.0057 7 6 2.2416 -2.6145 -0.0139 8 6 3.6909 -3.0375 -0.0164 9 7 4.2672 -4.2156 -0.0232 10 6 5.6064 -4.3043 -0.0242 11 6 6.2326 -5.5659 -0.0322 12 1 7.3053 -5.6356 -0.1354 13 6 5.4640 -6.7299 0.0937 14 7 4.1587 -6.6546 0.0951 15 14 6.3039 -8.3903 0.2595 16 1 6.5363 -8.6861 1.6961 17 1 5.4386 -9.4437 -0.3292 18 1 7.6046 -8.3607 -0.4564 19 6 6.3832 -3.1270 -0.0184 20 7 5.7965 -1.9513 -0.0115 21 6 4.4618 -1.8649 -0.0108 22 1 -0.3634 -0.0054 1.0276 23 1 -0.3633 -0.8873 -0.5186 24 1 -0.3633 0.8926 -0.5092 25 1 1.9064 2.1339 -0.0004 26 1 4.4075 1.3793 0.0075 27 1 1.7411 -2.9918 0.8778 28 1 1.7419 -2.9820 -0.9103 29 1 3.6264 -7.4608 0.1819 30 1 7.4612 -3.1920 -0.0196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798124.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:23 Heat of formation + Delta-G solvation = 109.449227 kcal Electronic energy + Delta-G solvation = -16166.290930 eV Core-core repulsion = 13541.865661 eV Total energy + Delta-G solvation = -2624.425269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96552 -38.77830 -34.66329 -33.48335 -32.35475 -31.37567 -28.78609 -26.62367 -25.79178 -24.86582 -22.43773 -20.93229 -19.37427 -18.49726 -17.56493 -16.36660 -15.73507 -15.21013 -14.96842 -14.09018 -13.74096 -13.70621 -13.35807 -12.61482 -12.35592 -12.20833 -12.18361 -11.75147 -11.47074 -11.42385 -11.35426 -10.79872 -10.60760 -10.36341 -9.90317 -9.46939 -9.02525 -8.47909 -7.69889 -7.33501 -7.03904 -6.50021 -4.60705 2.22057 2.72477 2.97085 3.00745 3.04110 3.05536 3.13246 3.81409 3.86786 4.71589 4.78660 4.94636 5.24016 5.38063 5.45327 5.46966 5.73022 5.74244 5.95740 6.22916 6.27492 6.31404 6.43471 6.73006 6.86101 6.93541 7.07602 7.25742 7.44329 7.62414 7.84667 7.91178 8.04151 8.39021 8.63456 9.30005 9.84577 10.08820 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.006098 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.060528 B = 4590.270841 C = 5172.664931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.427 5.427 3 C -0.027 4.027 4 C -0.170 4.170 5 C -0.080 4.080 6 C -0.041 4.041 7 C 0.036 3.964 8 C 0.114 3.886 9 N -0.445 5.445 10 C 0.208 3.792 11 C -0.404 4.404 12 H 0.094 0.906 13 C 0.063 3.937 14 N -0.706 5.706 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.259 1.259 19 C -0.050 4.050 20 N -0.420 5.420 21 C -0.043 4.043 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.132 0.868 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.278 0.722 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 5.565 0.055 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.104 5.104 3 C -0.154 4.154 4 C -0.196 4.196 5 C -0.088 4.088 6 C -0.155 4.155 7 C -0.003 4.003 8 C -0.037 4.037 9 N -0.162 5.162 10 C 0.083 3.917 11 C -0.435 4.435 12 H 0.112 0.888 13 C -0.163 4.163 14 N -0.326 5.326 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.182 1.182 19 C -0.222 4.222 20 N -0.131 5.131 21 C -0.179 4.179 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.178 0.822 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.557 5.430 0.062 9.305 hybrid contribution 0.303 -0.587 0.109 0.670 sum -7.254 4.843 0.171 8.724 Atomic orbital electron populations 1.21942 0.78175 1.03801 1.02710 1.42746 1.05118 1.04189 1.58331 1.21457 0.89885 0.90286 1.13793 1.20484 0.95447 0.93529 1.10108 1.18763 0.91562 0.91504 1.06936 1.20652 0.90747 0.91156 1.12922 1.18369 0.93843 0.85617 1.02440 1.21884 0.94998 0.90862 0.95980 1.68578 1.10019 1.21224 1.16404 1.19314 0.87949 0.93825 0.90632 1.19597 0.95267 0.89067 1.39604 0.88809 1.26189 0.94837 1.01618 0.93707 1.70107 1.05615 1.30289 1.26589 0.86203 0.80280 0.80137 0.79590 1.19168 1.19973 1.18233 1.23110 0.99279 0.88319 1.11533 1.67253 1.10305 1.28286 1.07238 1.19572 0.89518 0.91971 1.16838 0.91453 0.90171 0.90325 0.82232 0.85056 0.89372 0.89393 0.91115 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.10 59.85 0.66 1.45 16 2 N -0.43 -6.79 3.13 -119.30 -0.37 -7.17 16 3 C -0.03 -0.42 11.37 -16.77 -0.19 -0.61 16 4 C -0.17 -3.26 10.90 -39.39 -0.43 -3.69 16 5 C -0.08 -1.83 7.04 -104.83 -0.74 -2.56 16 6 C -0.04 -0.82 7.77 -81.04 -0.63 -1.45 16 7 C 0.04 0.75 6.73 -28.79 -0.19 0.55 16 8 C 0.11 2.92 7.51 -81.96 -0.62 2.31 16 9 N -0.45 -12.42 8.04 -6.87 -0.06 -12.48 16 10 C 0.21 5.73 6.54 -84.77 -0.55 5.18 16 11 C -0.40 -10.39 9.13 -37.92 -0.35 -10.74 16 12 H 0.09 2.19 7.85 -52.49 -0.41 1.78 16 13 C 0.06 1.54 5.49 -17.33 -0.10 1.45 16 14 N -0.71 -18.06 11.50 55.55 0.64 -17.42 16 15 Si 0.91 17.65 29.57 -169.99 -5.03 12.62 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 19 C -0.05 -1.30 10.97 -16.67 -0.18 -1.49 16 20 N -0.42 -11.29 10.52 -8.91 -0.09 -11.38 16 21 C -0.04 -1.12 7.37 -82.44 -0.61 -1.72 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 27 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 30 H 0.14 3.15 8.06 -52.49 -0.42 2.73 16 LS Contribution 267.01 15.07 4.02 4.02 Total: -1.00 -32.34 267.01 -7.73 -40.07 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.93 Total: 3.05 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.92 Total: -11.33 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.12 Total: -48.44 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.34 -7.73 -40.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798124.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.524 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds