Wall clock time and date at job start Mon Mar 30 2020 03:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36597 * 125.45957 * 2 1 4 4 C 1.34435 * 108.85350 * 179.81904 * 3 2 1 5 5 C 1.42227 * 107.34351 * 0.42643 * 4 3 2 6 6 C 1.35683 * 125.45415 * 180.29670 * 2 1 3 7 7 C 1.50931 * 144.15192 * 0.02562 * 6 2 1 8 8 C 1.50974 * 105.87630 * 179.97438 * 7 6 2 9 9 N 1.31158 * 132.33405 * 180.02562 * 8 7 6 10 10 C 1.34211 * 119.85136 * 179.97438 * 9 8 7 11 11 C 1.40848 * 120.18621 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00154 * 173.71164 * 11 10 9 13 13 C 1.40052 * 119.99693 * 353.71763 * 11 10 9 14 14 N 1.30749 * 120.00501 * 6.27595 * 13 11 10 15 15 Si 1.86811 * 119.99797 * 186.27418 * 13 11 10 16 16 H 1.48494 * 109.46838 * 90.00037 * 15 13 11 17 17 H 1.48500 * 109.47024 * 210.00222 * 15 13 11 18 18 H 1.48497 * 109.46932 * 330.00255 * 15 13 11 19 19 C 1.41054 * 119.63025 * 359.97438 * 10 9 8 20 20 N 1.31391 * 120.06297 * 0.02562 * 19 10 9 21 21 C 1.33756 * 120.22562 * 359.95893 * 20 19 10 22 22 H 1.08997 * 109.47642 * 269.69818 * 1 2 3 23 23 H 1.09002 * 109.46960 * 149.69507 * 1 2 3 24 24 H 1.08996 * 109.46809 * 29.70361 * 1 2 3 25 25 H 1.07997 * 125.57087 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.33329 * 180.16435 * 4 3 2 27 27 H 1.08998 * 110.17349 * 299.10473 * 7 6 2 28 28 H 1.09004 * 110.16664 * 60.90723 * 7 6 2 29 29 H 0.96998 * 120.00499 * 179.97438 * 14 13 11 30 30 H 1.08001 * 119.96445 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1126 0.0000 4 6 3.5457 0.7284 0.0040 5 6 3.5640 -0.6937 -0.0034 6 6 2.2520 -1.1052 -0.0057 7 6 2.2416 -2.6145 -0.0139 8 6 3.6909 -3.0375 -0.0164 9 7 4.2672 -4.2156 -0.0232 10 6 5.6064 -4.3043 -0.0242 11 6 6.2326 -5.5659 -0.0322 12 1 7.3053 -5.6356 -0.1354 13 6 5.4640 -6.7299 0.0937 14 7 4.1587 -6.6546 0.0951 15 14 6.3039 -8.3903 0.2595 16 1 6.5363 -8.6861 1.6961 17 1 5.4386 -9.4437 -0.3292 18 1 7.6046 -8.3607 -0.4564 19 6 6.3832 -3.1270 -0.0184 20 7 5.7965 -1.9513 -0.0115 21 6 4.4618 -1.8649 -0.0108 22 1 -0.3634 -0.0054 1.0276 23 1 -0.3633 -0.8873 -0.5186 24 1 -0.3633 0.8926 -0.5092 25 1 1.9064 2.1339 -0.0004 26 1 4.4075 1.3793 0.0075 27 1 1.7411 -2.9918 0.8778 28 1 1.7419 -2.9820 -0.9103 29 1 3.6264 -7.4608 0.1819 30 1 7.4612 -3.1920 -0.0196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798124.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:22 Heat of formation + Delta-G solvation = 88.655440 kcal Electronic energy + Delta-G solvation = -16167.192616 eV Core-core repulsion = 13541.865661 eV Total energy + Delta-G solvation = -2625.326956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.44922 -40.60301 -36.41038 -35.28811 -34.02057 -32.90521 -30.63225 -28.14088 -27.25480 -26.41161 -24.25112 -22.82236 -20.87647 -19.99524 -19.34517 -17.88309 -17.53519 -16.78946 -16.53771 -15.70816 -15.41469 -15.26160 -14.67380 -14.07974 -13.93755 -13.90044 -13.29637 -13.18940 -13.04609 -13.03033 -12.88999 -12.58746 -12.15805 -11.97805 -11.72423 -11.48552 -10.92377 -10.18691 -9.27482 -9.14990 -8.71384 -8.38447 -6.55087 0.38723 0.96612 1.36598 1.42255 1.54720 1.58065 1.86398 2.18518 2.19744 2.86506 3.29551 3.77626 3.81457 3.83883 4.08188 4.26220 4.44059 4.51704 4.58876 4.63347 4.66764 4.77542 4.85129 5.00571 5.09796 5.14002 5.37049 5.57993 5.79734 5.95766 6.10619 6.37600 6.45719 6.60567 6.70977 7.31946 7.86854 8.28867 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.006098 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.060528 B = 4590.270841 C = 5172.664931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.418 5.418 3 C 0.010 3.990 4 C -0.205 4.205 5 C -0.139 4.139 6 C -0.034 4.034 7 C 0.045 3.955 8 C 0.088 3.912 9 N -0.472 5.472 10 C 0.173 3.827 11 C -0.427 4.427 12 H 0.108 0.892 13 C 0.019 3.981 14 N -0.742 5.742 15 Si 1.000 3.000 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.250 1.250 19 C -0.070 4.070 20 N -0.443 5.443 21 C -0.063 4.063 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.215 0.785 26 H 0.133 0.867 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.287 0.713 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 6.138 0.122 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.093 5.093 3 C -0.119 4.119 4 C -0.230 4.230 5 C -0.147 4.147 6 C -0.150 4.150 7 C 0.006 3.994 8 C -0.063 4.063 9 N -0.189 5.189 10 C 0.048 3.952 11 C -0.458 4.458 12 H 0.126 0.874 13 C -0.205 4.205 14 N -0.363 5.363 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.173 1.173 19 C -0.242 4.242 20 N -0.154 5.154 21 C -0.200 4.200 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.133 0.867 25 H 0.232 0.768 26 H 0.151 0.849 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.557 6.031 0.124 11.301 hybrid contribution 0.796 -0.603 0.086 1.002 sum -8.761 5.427 0.210 10.308 Atomic orbital electron populations 1.22400 0.74294 1.06107 1.04671 1.43172 1.07338 1.02719 1.56067 1.22181 0.88388 0.92115 1.09169 1.20717 0.97691 0.92055 1.12558 1.19051 0.92091 0.92792 1.10789 1.20530 0.90616 0.91381 1.12465 1.18319 0.90809 0.86489 1.03788 1.22700 0.97747 0.90359 0.95454 1.68585 1.10405 1.22423 1.17536 1.19798 0.88530 0.95020 0.91866 1.20047 0.96280 0.89440 1.40048 0.87417 1.27215 0.95336 1.05435 0.92524 1.70185 1.07341 1.32065 1.26715 0.84943 0.79237 0.74312 0.79676 1.18651 1.18984 1.17290 1.23392 1.00171 0.88252 1.12347 1.67280 1.11324 1.28595 1.08233 1.20334 0.89551 0.94209 1.15895 0.89577 0.89402 0.86714 0.76800 0.84876 0.87862 0.87783 0.90194 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 11.10 127.77 1.42 2.44 16 2 N -0.42 -11.76 3.13 -531.34 -1.66 -13.43 16 3 C 0.01 0.28 11.37 83.08 0.94 1.22 16 4 C -0.21 -7.69 10.90 22.39 0.24 -7.44 16 5 C -0.14 -6.43 7.04 -20.00 -0.14 -6.57 16 6 C -0.03 -1.32 7.77 41.86 0.33 -1.00 16 7 C 0.04 1.84 6.73 29.26 0.20 2.04 16 8 C 0.09 4.70 7.51 43.26 0.32 5.03 16 9 N -0.47 -27.54 8.04 -175.64 -1.41 -28.95 16 10 C 0.17 10.00 6.54 40.11 0.26 10.26 16 11 C -0.43 -22.69 9.13 23.35 0.21 -22.48 16 12 H 0.11 5.16 7.85 -2.91 -0.02 5.14 16 13 C 0.02 0.91 5.49 85.29 0.47 1.38 16 14 N -0.74 -38.76 11.50 21.84 0.25 -38.51 16 15 Si 1.00 36.00 29.57 68.60 2.03 38.03 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 17 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 18 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 19 C -0.07 -3.90 10.97 85.45 0.94 -2.97 16 20 N -0.44 -25.15 10.52 -182.10 -1.92 -27.06 16 21 C -0.06 -3.46 7.37 41.82 0.31 -3.15 16 22 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 28 H 0.10 3.87 8.14 -2.38 -0.02 3.85 16 29 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 30 H 0.15 7.53 8.06 -2.91 -0.02 7.50 16 Total: -1.00 -75.41 267.01 3.95 -71.46 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.16 Total: 19.70 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.50 Total: -21.24 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.74 Total: -107.95 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -75.41 3.95 -71.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798124.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.118 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds