Wall clock time and date at job start Mon Mar 30 2020 03:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47138 * 2 1 4 4 C 1.53002 * 109.47337 * 119.99756 * 2 1 3 5 5 N 1.46501 * 109.46709 * 64.99992 * 4 2 1 6 6 C 1.36545 * 127.14058 * 90.02236 * 5 4 2 7 7 S 1.76195 * 126.48344 * 0.02562 * 6 5 4 8 8 N 1.31280 * 107.03099 * 179.73555 * 6 5 4 9 9 N 1.28525 * 109.85761 * 0.27153 * 8 6 5 10 10 C 1.30300 * 110.07877 * 359.97438 * 9 8 6 11 11 C 1.50704 * 126.34227 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46655 * 89.97915 * 11 10 9 13 13 H 1.07991 * 120.00653 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99538 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47503 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46926 * 120.00515 * 16 14 12 19 19 H 1.48502 * 109.47184 * 239.99945 * 16 14 12 20 20 H 1.08998 * 109.47500 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47146 * 299.99820 * 1 2 3 22 22 H 1.08997 * 109.47603 * 59.99363 * 1 2 3 23 23 H 1.08997 * 109.47269 * 240.00609 * 2 1 3 24 24 H 1.09002 * 109.47480 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47602 * 300.00256 * 3 2 1 26 26 H 1.09003 * 109.46954 * 60.00063 * 3 2 1 27 27 H 1.08988 * 109.47299 * 305.00295 * 4 2 1 28 28 H 1.08999 * 109.47199 * 184.99807 * 4 2 1 29 29 H 1.41005 * 99.99931 * 269.70773 * 7 6 5 30 30 H 1.09000 * 109.46964 * 209.97822 * 11 10 9 31 31 H 1.08996 * 109.46910 * 329.98152 * 11 10 9 32 32 H 0.97000 * 119.99984 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.3645 -3.1612 0.6431 7 16 3.9410 -3.0461 -0.1354 8 7 1.6552 -4.2529 0.8122 9 7 0.5574 -3.9708 1.4179 10 6 0.5009 -2.6936 1.6700 11 6 -0.6223 -1.9696 2.3665 12 6 -0.3618 -1.9478 3.8507 13 1 0.5283 -2.4114 4.2496 14 6 -1.2593 -1.3349 4.6992 15 7 -2.3430 -0.7699 4.2133 16 14 -0.9367 -1.3085 6.5389 17 1 0.3409 -2.0080 6.8276 18 1 -0.8466 0.0985 7.0055 19 1 -2.0479 -1.9943 7.2462 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 3.1263 -0.6443 1.2951 29 1 3.5400 -2.8155 -1.4674 30 1 -0.6824 -0.9473 1.9931 31 1 -1.5630 -2.4840 2.1703 32 1 -2.9746 -0.3391 4.8103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:52 Heat of formation + Delta-G solvation = 59.562582 kcal Electronic energy + Delta-G solvation = -15649.240406 eV Core-core repulsion = 13158.095841 eV Total energy + Delta-G solvation = -2491.144565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32696 -36.85809 -33.61747 -32.89910 -31.07814 -27.84152 -27.06684 -26.51050 -23.55600 -22.29243 -20.68693 -19.75540 -17.81560 -16.70443 -16.37031 -15.52410 -15.04472 -14.77620 -14.33923 -13.70222 -13.23857 -12.83050 -12.49998 -12.27331 -12.08511 -11.70999 -11.43097 -11.34662 -11.11346 -10.96326 -10.85225 -10.72468 -10.59815 -10.15509 -9.82727 -9.70705 -9.50632 -8.59496 -8.39859 -8.25213 -6.23263 -4.27862 1.28013 1.85266 2.70100 3.13979 3.21102 3.29885 3.34968 3.51942 4.32011 4.72125 4.80405 4.99985 5.12665 5.24160 5.46393 5.48414 5.68043 5.76580 5.78210 5.84887 5.95653 6.06456 6.20724 6.33452 6.47445 6.58989 7.16455 7.31330 7.39133 7.71784 8.02069 8.74229 9.27293 9.37188 10.86667 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.008224 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.837275 B = 3403.695323 C = 3992.897147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.106 3.894 5 N -0.459 5.459 6 C 0.107 3.893 7 S -0.022 6.022 8 N -0.247 5.247 9 N -0.315 5.315 10 C 0.262 3.738 11 C 0.084 3.916 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.295 5.418 -8.455 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.126 4.126 3 C -0.200 4.200 4 C -0.017 4.017 5 N -0.151 5.151 6 C -0.268 4.268 7 S 0.127 5.873 8 N -0.091 5.091 9 N -0.157 5.157 10 C -0.005 4.005 11 C 0.045 3.955 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.663 4.094 -8.644 13.597 hybrid contribution -0.734 1.371 0.628 1.677 sum 8.930 5.466 -8.016 13.186 Atomic orbital electron populations 1.22086 0.93856 1.02757 1.02579 1.21439 0.97488 0.96634 0.97012 1.21755 1.00899 0.94751 1.02639 1.22112 1.01858 0.76920 1.00797 1.46984 1.15957 1.09045 1.43150 1.25451 1.01621 0.87996 1.11687 1.86572 0.98072 1.94956 1.07660 1.74612 1.00093 1.22147 1.12295 1.74156 1.13112 1.11756 1.16702 1.26535 0.89089 0.90615 0.94254 1.18275 0.87952 0.95097 0.94186 1.20903 1.07991 1.37008 0.89887 0.92352 1.24925 0.94701 0.94843 0.99262 1.69935 1.10902 1.36319 1.35509 0.86403 0.78616 0.77773 0.84539 1.19614 1.20803 1.20609 0.92265 0.90677 0.92774 0.91783 0.92386 0.92194 0.91732 0.87001 0.88487 0.94444 0.92747 0.92498 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.61 37.15 0.28 -2.01 16 2 C -0.11 -1.36 3.13 -90.62 -0.28 -1.64 16 3 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 4 C 0.11 1.59 5.19 -4.04 -0.02 1.57 16 5 N -0.46 -8.69 2.62 -113.54 -0.30 -8.99 16 6 C 0.11 2.02 8.37 -88.34 -0.74 1.28 16 7 S -0.02 -0.31 25.77 -107.50 -2.77 -3.08 16 8 N -0.25 -5.52 12.23 30.68 0.38 -5.14 16 9 N -0.32 -7.68 12.17 33.00 0.40 -7.28 16 10 C 0.26 5.94 6.03 -153.99 -0.93 5.02 16 11 C 0.08 2.05 4.63 -29.03 -0.13 1.91 16 12 C -0.52 -13.84 9.09 -34.44 -0.31 -14.15 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 16 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H 0.06 1.02 5.88 -51.93 -0.31 0.72 16 21 H 0.07 1.19 7.01 -51.93 -0.36 0.83 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.11 1.80 7.91 -51.94 -0.41 1.39 16 28 H 0.10 1.23 7.86 -51.93 -0.41 0.82 16 29 H 0.09 1.07 9.55 96.90 0.93 2.00 16 30 H 0.05 1.26 4.77 -51.93 -0.25 1.01 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -29.75 283.52 -7.08 -36.84 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -2.89 Total: -1.19 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.89 Total: -7.46 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 1.22 Total: -45.07 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.77 Total: -3.08 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.75 -7.08 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.399 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds