Wall clock time and date at job start Mon Mar 30 2020 03:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47138 * 2 1 4 4 C 1.53002 * 109.47337 * 119.99756 * 2 1 3 5 5 N 1.46501 * 109.46709 * 64.99992 * 4 2 1 6 6 C 1.36545 * 127.14058 * 90.02236 * 5 4 2 7 7 S 1.76195 * 126.48344 * 0.02562 * 6 5 4 8 8 N 1.31280 * 107.03099 * 179.73555 * 6 5 4 9 9 N 1.28525 * 109.85761 * 0.27153 * 8 6 5 10 10 C 1.30300 * 110.07877 * 359.97438 * 9 8 6 11 11 C 1.50704 * 126.34227 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46655 * 89.97915 * 11 10 9 13 13 H 1.07991 * 120.00653 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99538 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47503 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46926 * 120.00515 * 16 14 12 19 19 H 1.48502 * 109.47184 * 239.99945 * 16 14 12 20 20 H 1.08998 * 109.47500 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47146 * 299.99820 * 1 2 3 22 22 H 1.08997 * 109.47603 * 59.99363 * 1 2 3 23 23 H 1.08997 * 109.47269 * 240.00609 * 2 1 3 24 24 H 1.09002 * 109.47480 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47602 * 300.00256 * 3 2 1 26 26 H 1.09003 * 109.46954 * 60.00063 * 3 2 1 27 27 H 1.08988 * 109.47299 * 305.00295 * 4 2 1 28 28 H 1.08999 * 109.47199 * 184.99807 * 4 2 1 29 29 H 1.41005 * 99.99931 * 269.70773 * 7 6 5 30 30 H 1.09000 * 109.46964 * 209.97822 * 11 10 9 31 31 H 1.08996 * 109.46910 * 329.98152 * 11 10 9 32 32 H 0.97000 * 119.99984 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.3645 -3.1612 0.6431 7 16 3.9410 -3.0461 -0.1354 8 7 1.6552 -4.2529 0.8122 9 7 0.5574 -3.9708 1.4179 10 6 0.5009 -2.6936 1.6700 11 6 -0.6223 -1.9696 2.3665 12 6 -0.3618 -1.9478 3.8507 13 1 0.5283 -2.4114 4.2496 14 6 -1.2593 -1.3349 4.6992 15 7 -2.3430 -0.7699 4.2133 16 14 -0.9367 -1.3085 6.5389 17 1 0.3409 -2.0080 6.8276 18 1 -0.8466 0.0985 7.0055 19 1 -2.0479 -1.9943 7.2462 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 3.1263 -0.6443 1.2951 29 1 3.5400 -2.8155 -1.4674 30 1 -0.6824 -0.9473 1.9931 31 1 -1.5630 -2.4840 2.1703 32 1 -2.9746 -0.3391 4.8103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:52 Heat of formation + Delta-G solvation = 42.243620 kcal Electronic energy + Delta-G solvation = -15649.991413 eV Core-core repulsion = 13158.095841 eV Total energy + Delta-G solvation = -2491.895572 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.93581 -38.09224 -35.58577 -34.29028 -32.92477 -29.63497 -28.21275 -27.76113 -25.50366 -23.78638 -22.13199 -21.11096 -19.14240 -18.68481 -17.74919 -17.11876 -16.68055 -16.18128 -15.63148 -14.99497 -14.80958 -14.37826 -14.06500 -13.83400 -13.22571 -13.02371 -12.97353 -12.72116 -12.63687 -12.56274 -12.33970 -12.14193 -11.97171 -11.75955 -11.58629 -11.49552 -10.95408 -10.64093 -10.09566 -9.37823 -8.28647 -6.40833 -0.00522 0.42130 1.37863 1.39253 1.43886 1.53031 1.69743 1.89981 2.38550 3.04793 3.54248 3.69199 3.71180 3.95179 4.12766 4.19350 4.41255 4.62366 4.68673 4.75384 4.84221 4.97097 5.03807 5.09430 5.20260 5.28099 5.37249 5.42198 5.62465 5.79105 6.01956 6.64603 7.27541 7.61447 8.81543 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.008224 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.837275 B = 3403.695323 C = 3992.897147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.097 3.903 5 N -0.451 5.451 6 C 0.119 3.881 7 S 0.016 5.984 8 N -0.286 5.286 9 N -0.353 5.353 10 C 0.244 3.756 11 C 0.099 3.901 12 C -0.535 4.535 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.267 1.267 19 H -0.278 1.278 20 H 0.026 0.974 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.499 6.856 -9.069 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 C -0.194 4.194 4 C -0.024 4.024 5 N -0.143 5.143 6 C -0.256 4.256 7 S 0.164 5.836 8 N -0.130 5.130 9 N -0.195 5.195 10 C -0.025 4.025 11 C 0.060 3.940 12 C -0.574 4.574 13 H 0.062 0.938 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.192 1.192 19 H -0.204 1.204 20 H 0.045 0.955 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.865 5.546 -9.264 16.042 hybrid contribution -1.329 0.937 0.693 1.767 sum 10.536 6.483 -8.571 15.050 Atomic orbital electron populations 1.22035 0.95771 1.00596 1.02696 1.21422 0.95700 0.98489 0.96038 1.21735 1.02270 0.92276 1.03130 1.22502 1.03685 0.74796 1.01448 1.47161 1.14635 1.10548 1.41907 1.26331 1.02668 0.86984 1.09625 1.86467 0.93655 1.94662 1.08770 1.74525 1.00426 1.23905 1.14100 1.74015 1.14730 1.12894 1.17844 1.25985 0.90294 0.90483 0.95727 1.17922 0.87407 0.95173 0.93544 1.21051 1.07766 1.37259 0.91323 0.93797 1.25672 0.94342 0.94262 1.03432 1.70017 1.11535 1.36686 1.37109 0.85443 0.78172 0.78399 0.79325 1.19843 1.19180 1.20359 0.95532 0.92485 0.90676 0.90787 0.90150 0.90793 0.92220 0.88595 0.85356 0.91487 0.92025 0.95904 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 7.61 71.98 0.55 -3.94 16 2 C -0.10 -2.27 3.13 -10.79 -0.03 -2.31 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.60 16 4 C 0.10 2.75 5.19 86.38 0.45 3.20 16 5 N -0.45 -16.94 2.62 -513.13 -1.34 -18.28 16 6 C 0.12 4.39 8.37 179.55 1.50 5.89 16 7 S 0.02 0.38 25.77 -56.49 -1.46 -1.07 16 8 N -0.29 -12.91 12.23 -56.85 -0.70 -13.60 16 9 N -0.35 -17.84 12.17 -49.52 -0.60 -18.45 16 10 C 0.24 11.47 6.03 137.63 0.83 12.30 16 11 C 0.10 5.05 4.63 29.10 0.13 5.19 16 12 C -0.54 -29.47 9.09 25.60 0.23 -29.24 16 13 H 0.04 2.49 7.74 -2.92 -0.02 2.47 16 14 C 0.02 1.27 5.46 84.66 0.46 1.73 16 15 N -0.91 -51.09 13.29 21.45 0.28 -50.80 16 16 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H 0.03 0.93 5.88 -2.39 -0.01 0.92 16 21 H 0.06 1.84 7.01 -2.39 -0.02 1.83 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 3.07 7.91 -2.39 -0.02 3.05 16 28 H 0.13 2.82 7.86 -2.39 -0.02 2.80 16 29 H 0.12 2.27 9.55 73.80 0.70 2.98 16 30 H 0.06 3.00 4.77 -2.39 -0.01 2.99 16 31 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.27 14.12 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -66.33 283.52 4.84 -61.49 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.84 Total: 4.83 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.79 Total: -8.78 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -2.36 Total: -101.13 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.46 Total: -1.07 kcal Total: -66.33 4.84 -61.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.735 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds