Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99350 * 3 2 1 5 5 H 1.48499 * 109.47335 * 29.99868 * 3 2 1 6 6 H 1.48508 * 109.46898 * 149.99898 * 3 2 1 7 7 C 1.37878 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99460 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.38704 * 120.72445 * 90.00213 * 10 9 7 12 12 N 1.32182 * 119.19088 * 180.27681 * 11 10 9 13 13 C 1.32560 * 120.74267 * 359.48661 * 12 11 10 14 14 C 1.48411 * 119.21000 * 180.26407 * 13 12 11 15 15 C 1.39735 * 120.90485 * 179.97438 * 14 13 12 16 16 C 1.38051 * 119.01682 * 179.73078 * 15 14 13 17 17 N 1.31875 * 120.88568 * 0.56101 * 16 15 14 18 18 C 1.31878 * 122.00826 * 359.71094 * 17 16 15 19 19 C 1.38057 * 120.87925 * 0.02562 * 18 17 16 20 20 N 1.32553 * 121.57469 * 0.52344 * 13 12 11 21 21 C 1.32181 * 120.75093 * 359.74684 * 20 13 12 22 22 H 0.97001 * 120.00411 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46832 * 59.99940 * 9 7 2 24 24 H 1.09002 * 109.47050 * 299.99764 * 9 7 2 25 25 H 1.08002 * 120.40190 * 359.97438 * 11 10 9 26 26 H 1.07991 * 120.48826 * 359.97438 * 15 14 13 27 27 H 1.08007 * 119.56065 * 180.29599 * 16 15 14 28 28 H 1.08003 * 119.56407 * 180.02562 * 18 17 16 29 29 H 1.08006 * 120.48928 * 180.02562 * 19 18 17 30 30 H 1.07995 * 120.40639 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6908 -4.1833 1.1929 12 7 3.5536 -5.1840 1.1575 13 6 3.9705 -5.6787 0.0005 14 6 4.9353 -6.8064 0.0005 15 6 5.3977 -7.3554 -1.1984 16 6 6.2991 -8.4000 -1.1530 17 7 6.7145 -8.8860 0.0005 18 6 6.2987 -8.4005 1.1540 19 6 5.4013 -7.3523 1.1994 20 7 3.5501 -5.1870 -1.1564 21 6 2.6912 -4.1829 -1.1919 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.3522 -3.7867 2.1386 26 1 5.0579 -6.9657 -2.1465 27 1 6.6659 -8.8278 -2.0744 28 1 6.6651 -8.8285 2.0754 29 1 5.0653 -6.9593 2.1477 30 1 2.3527 -3.7863 -2.1376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = 72.019143 kcal Electronic energy + Delta-G solvation = -15498.365925 eV Core-core repulsion = 12872.317565 eV Total energy + Delta-G solvation = -2626.048360 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77197 -39.67845 -34.53447 -33.35069 -32.99184 -31.29433 -31.19106 -27.62355 -24.79127 -24.46485 -22.91592 -22.73575 -21.11110 -17.87530 -17.24838 -16.55873 -15.66255 -15.63647 -15.27223 -14.77675 -14.64304 -13.67487 -13.65944 -13.43007 -13.05045 -12.98447 -12.44961 -11.70326 -11.55298 -11.36576 -10.84852 -10.63514 -10.40221 -10.32366 -9.75680 -9.63731 -9.56082 -9.16461 -8.87482 -8.57475 -8.29021 -6.24056 -4.30386 0.61052 1.14798 1.52864 1.92470 3.19606 3.26852 3.30295 3.76897 3.90286 4.25248 4.39107 4.40792 4.43100 4.99351 5.11267 5.13055 5.19014 5.20405 5.33494 5.60154 5.63284 5.78602 5.80904 6.15939 6.23884 6.48350 6.65285 6.83995 7.24772 7.34374 7.40670 7.69696 7.91975 8.03349 8.40725 8.73734 9.35582 10.85454 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049321 B = 0.004466 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.572530 B = 6268.600108 C = 6272.330381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.055 3.945 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.505 5.505 13 C 0.300 3.700 14 C 0.022 3.978 15 C -0.135 4.135 16 C 0.089 3.911 17 N -0.485 5.485 18 C 0.089 3.911 19 C -0.135 4.135 20 N -0.505 5.505 21 C 0.135 3.865 22 H 0.265 0.735 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.169 0.831 26 H 0.147 0.853 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -11.948 0.000 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.017 3.983 10 C -0.124 4.124 11 C -0.031 4.031 12 N -0.219 5.219 13 C 0.035 3.965 14 C 0.012 3.988 15 C -0.156 4.156 16 C -0.068 4.068 17 N -0.195 5.195 18 C -0.068 4.068 19 C -0.156 4.156 20 N -0.219 5.219 21 C -0.031 4.031 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.187 0.813 26 H 0.164 0.836 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.497 -13.255 0.005 15.744 hybrid contribution -0.898 2.580 -0.010 2.731 sum 7.599 -10.675 -0.005 13.103 Atomic orbital electron populations 1.69934 1.06055 1.27281 1.49407 1.24983 0.94911 0.99369 0.94638 0.86486 0.79807 0.82800 0.78369 1.20396 1.20939 1.19768 1.20956 0.92947 0.89529 1.52598 0.92517 1.18311 0.92029 0.88584 0.99365 1.22608 0.98332 0.97354 0.94068 1.23145 0.90761 0.89939 0.99254 1.68137 1.12080 1.12009 1.29628 1.20780 0.95822 0.95162 0.84746 1.18443 0.93956 0.92500 0.93870 1.22315 0.97358 0.96726 0.99202 1.22683 0.94290 0.93596 0.96212 1.67554 1.24348 1.28933 0.98653 1.22685 0.94309 0.93574 0.96211 1.22318 0.97353 0.96727 0.99203 1.68132 1.12077 1.12021 1.29631 1.23144 0.90808 0.89898 0.99251 0.92499 0.94438 0.94420 0.81348 0.83560 0.82524 0.82521 0.83558 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.50 9.09 -34.44 -0.31 -13.81 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.27 5.15 -29.03 -0.15 1.12 16 10 C -0.12 -2.37 5.11 -104.28 -0.53 -2.90 16 11 C 0.13 2.49 11.00 -17.23 -0.19 2.30 16 12 N -0.51 -9.14 9.55 -11.13 -0.11 -9.24 16 13 C 0.30 5.33 7.57 -156.96 -1.19 4.14 16 14 C 0.02 0.34 5.91 -104.59 -0.62 -0.28 16 15 C -0.13 -1.78 9.65 -39.09 -0.38 -2.16 16 16 C 0.09 1.05 11.17 -17.60 -0.20 0.85 16 17 N -0.49 -6.25 10.34 -13.32 -0.14 -6.39 16 18 C 0.09 1.05 11.17 -17.60 -0.20 0.85 16 19 C -0.13 -1.78 9.65 -39.09 -0.38 -2.16 16 20 N -0.51 -9.13 9.55 -11.13 -0.11 -9.24 16 21 C 0.13 2.49 11.00 -17.23 -0.19 2.30 16 22 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 24 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 25 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 26 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 27 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 28 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.15 1.84 7.61 -52.48 -0.40 1.44 16 30 H 0.17 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -29.04 275.24 -7.79 -36.82 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -2.87 Total: 0.47 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -4.43 Total: -8.16 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.39 Total: -48.70 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.04 -7.79 -36.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.842 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds