Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99350 * 3 2 1 5 5 H 1.48499 * 109.47335 * 29.99868 * 3 2 1 6 6 H 1.48508 * 109.46898 * 149.99898 * 3 2 1 7 7 C 1.37878 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99460 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.38704 * 120.72445 * 90.00213 * 10 9 7 12 12 N 1.32182 * 119.19088 * 180.27681 * 11 10 9 13 13 C 1.32560 * 120.74267 * 359.48661 * 12 11 10 14 14 C 1.48411 * 119.21000 * 180.26407 * 13 12 11 15 15 C 1.39735 * 120.90485 * 179.97438 * 14 13 12 16 16 C 1.38051 * 119.01682 * 179.73078 * 15 14 13 17 17 N 1.31875 * 120.88568 * 0.56101 * 16 15 14 18 18 C 1.31878 * 122.00826 * 359.71094 * 17 16 15 19 19 C 1.38057 * 120.87925 * 0.02562 * 18 17 16 20 20 N 1.32553 * 121.57469 * 0.52344 * 13 12 11 21 21 C 1.32181 * 120.75093 * 359.74684 * 20 13 12 22 22 H 0.97001 * 120.00411 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46832 * 59.99940 * 9 7 2 24 24 H 1.09002 * 109.47050 * 299.99764 * 9 7 2 25 25 H 1.08002 * 120.40190 * 359.97438 * 11 10 9 26 26 H 1.07991 * 120.48826 * 359.97438 * 15 14 13 27 27 H 1.08007 * 119.56065 * 180.29599 * 16 15 14 28 28 H 1.08003 * 119.56407 * 180.02562 * 18 17 16 29 29 H 1.08006 * 120.48928 * 180.02562 * 19 18 17 30 30 H 1.07995 * 120.40639 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6908 -4.1833 1.1929 12 7 3.5536 -5.1840 1.1575 13 6 3.9705 -5.6787 0.0005 14 6 4.9353 -6.8064 0.0005 15 6 5.3977 -7.3554 -1.1984 16 6 6.2991 -8.4000 -1.1530 17 7 6.7145 -8.8860 0.0005 18 6 6.2987 -8.4005 1.1540 19 6 5.4013 -7.3523 1.1994 20 7 3.5501 -5.1870 -1.1564 21 6 2.6912 -4.1829 -1.1919 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.3522 -3.7867 2.1386 26 1 5.0579 -6.9657 -2.1465 27 1 6.6659 -8.8278 -2.0744 28 1 6.6651 -8.8285 2.0754 29 1 5.0653 -6.9593 2.1477 30 1 2.3527 -3.7863 -2.1376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = 55.663404 kcal Electronic energy + Delta-G solvation = -15499.075163 eV Core-core repulsion = 12872.317565 eV Total energy + Delta-G solvation = -2626.757598 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.12670 -40.74867 -36.15514 -34.77438 -34.55994 -32.79851 -32.16091 -29.28570 -26.36219 -25.80608 -24.20147 -23.98764 -22.57983 -19.03772 -18.63303 -18.56910 -16.81491 -16.71683 -16.66228 -16.25245 -16.02977 -15.09369 -14.75844 -14.64478 -14.35345 -14.33321 -14.25660 -13.49438 -13.14960 -12.67605 -12.58319 -12.39249 -11.86295 -11.83627 -11.48805 -11.20363 -10.67165 -10.54693 -10.24548 -10.10876 -9.75636 -8.25017 -6.37747 -0.64586 0.07143 0.19796 0.65269 1.40259 1.41985 1.51748 2.37287 2.63582 2.66498 3.05001 3.06309 3.09357 3.58834 3.75771 4.00537 4.02001 4.09830 4.10864 4.20416 4.32609 4.68356 4.86717 4.93233 4.93724 5.27295 5.33168 5.42135 5.51552 5.67384 5.70423 5.94865 6.07696 6.73146 6.95682 6.98589 7.31766 8.84329 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049321 B = 0.004466 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.572530 B = 6268.600108 C = 6272.330381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.067 3.933 10 C -0.143 4.143 11 C 0.138 3.862 12 N -0.510 5.510 13 C 0.302 3.698 14 C -0.008 4.008 15 C -0.136 4.136 16 C 0.094 3.906 17 N -0.496 5.496 18 C 0.094 3.906 19 C -0.136 4.136 20 N -0.510 5.510 21 C 0.138 3.862 22 H 0.267 0.733 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.183 0.817 26 H 0.150 0.850 27 H 0.190 0.810 28 H 0.190 0.810 29 H 0.150 0.850 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 -12.880 -0.018 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.029 3.971 10 C -0.147 4.147 11 C -0.028 4.028 12 N -0.223 5.223 13 C 0.037 3.963 14 C -0.018 4.018 15 C -0.158 4.158 16 C -0.062 4.062 17 N -0.205 5.205 18 C -0.062 4.062 19 C -0.158 4.158 20 N -0.223 5.223 21 C -0.027 4.027 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.200 0.800 26 H 0.168 0.832 27 H 0.207 0.793 28 H 0.207 0.793 29 H 0.167 0.833 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.216 -14.197 -0.015 17.490 hybrid contribution -1.354 2.721 -0.004 3.040 sum 8.861 -11.476 -0.019 14.499 Atomic orbital electron populations 1.70032 1.07396 1.28154 1.50525 1.25756 0.95647 1.02625 0.94366 0.85528 0.78564 0.78958 0.78512 1.19806 1.20496 1.19473 1.21256 0.92874 0.91002 1.52008 0.93066 1.18007 0.92176 0.89139 0.97805 1.22285 0.99341 0.97691 0.95344 1.23352 0.90291 0.89693 0.99417 1.68245 1.12268 1.12014 1.29791 1.21431 0.95230 0.95131 0.84519 1.18611 0.94848 0.92808 0.95559 1.22429 0.97581 0.97066 0.98687 1.23171 0.93164 0.92645 0.97203 1.67669 1.24520 1.29141 0.99220 1.23172 0.93183 0.92624 0.97203 1.22432 0.97575 0.97075 0.98689 1.68240 1.12269 1.12017 1.29786 1.23351 0.90325 0.89649 0.99412 0.92349 0.95959 0.95947 0.80027 0.83248 0.79335 0.79336 0.83253 0.80013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.59 13.29 21.45 0.28 -51.31 16 2 C 0.02 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.53 -27.88 9.09 25.60 0.23 -27.65 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 9 C 0.07 3.16 5.15 29.10 0.15 3.31 16 10 C -0.14 -5.70 5.11 -19.64 -0.10 -5.80 16 11 C 0.14 5.09 11.00 84.75 0.93 6.02 16 12 N -0.51 -18.12 9.55 -189.11 -1.81 -19.93 16 13 C 0.30 10.50 7.57 137.59 1.04 11.54 16 14 C -0.01 -0.24 5.91 -19.84 -0.12 -0.36 16 15 C -0.14 -3.36 9.65 22.59 0.22 -3.14 16 16 C 0.09 1.96 11.17 84.64 0.95 2.91 16 17 N -0.50 -11.31 10.34 -196.06 -2.03 -13.33 16 18 C 0.09 1.96 11.17 84.64 0.95 2.91 16 19 C -0.14 -3.36 9.65 22.59 0.22 -3.14 16 20 N -0.51 -18.10 9.55 -189.12 -1.81 -19.91 16 21 C 0.14 5.09 11.00 84.75 0.93 6.02 16 22 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 23 H 0.02 1.10 8.10 -2.39 -0.02 1.08 16 24 H 0.02 1.10 8.10 -2.39 -0.02 1.09 16 25 H 0.18 6.01 8.06 -2.91 -0.02 5.99 16 26 H 0.15 3.52 7.61 -2.91 -0.02 3.50 16 27 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.15 3.52 7.61 -2.91 -0.02 3.50 16 30 H 0.18 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -61.02 275.24 3.68 -57.34 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.15 Total: 9.35 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.86 Total: -6.08 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -5.36 Total: -104.48 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -61.02 3.68 -57.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.006 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds