Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86797 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47314 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47035 * 119.99759 * 3 2 1 6 6 H 1.48503 * 109.47043 * 239.99754 * 3 2 1 7 7 C 1.40055 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00375 * 356.79013 * 7 2 1 9 9 C 1.40851 * 119.99632 * 176.78326 * 7 2 1 10 10 C 1.41047 * 119.92725 * 186.44791 * 9 7 2 11 11 N 1.31685 * 119.62958 * 181.44253 * 10 9 7 12 12 C 1.32748 * 119.88686 * 359.42566 * 11 10 9 13 13 C 1.40993 * 120.99822 * 358.69233 * 12 11 10 14 14 N 1.31554 * 119.15583 * 2.13595 * 13 12 11 15 15 C 1.50279 * 120.87750 * 183.30789 * 13 12 11 16 16 C 1.52740 * 112.64329 * 324.17394 * 15 13 12 17 17 C 1.50523 * 109.66421 * 46.86589 * 16 15 13 18 18 N 1.34544 * 130.65330 * 148.75389 * 17 16 15 19 19 H 0.97000 * 125.44444 * 359.91316 * 18 17 16 20 20 C 1.37037 * 109.11076 * 179.89933 * 18 17 16 21 21 C 1.34984 * 108.96606 * 0.02562 * 20 18 17 22 22 C 1.38976 * 121.75924 * 328.67615 * 17 16 15 23 23 H 0.96992 * 120.00174 * 175.11360 * 1 2 3 24 24 H 1.08001 * 120.18723 * 1.42926 * 10 9 7 25 25 H 1.09006 * 108.86639 * 203.34141 * 15 13 12 26 26 H 1.09000 * 108.73626 * 84.91891 * 15 13 12 27 27 H 1.09006 * 109.43892 * 286.80394 * 16 15 13 28 28 H 1.08997 * 109.40629 * 166.90731 * 16 15 13 29 29 H 1.08006 * 125.51404 * 180.02562 * 20 18 17 30 30 H 1.08002 * 126.48030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2767 2.7465 -0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0954 1.6963 -1.2125 7 6 2.0078 -1.2130 0.0005 8 1 1.4691 -2.1475 0.0533 9 6 3.4146 -1.2140 -0.0679 10 6 4.1116 -2.4326 -0.2045 11 7 5.4280 -2.4293 -0.2393 12 6 6.0890 -1.2810 -0.1572 13 6 5.4025 -0.0533 -0.0601 14 7 4.0880 -0.0564 -0.0086 15 6 6.1512 1.2496 -0.0416 16 6 7.4802 1.1536 0.7052 17 6 8.2254 -0.0750 0.2570 18 7 9.5462 -0.3124 0.1602 19 1 10.2488 0.3193 0.3798 20 6 9.7401 -1.5892 -0.2981 21 6 8.5386 -2.1715 -0.4960 22 6 7.5610 -1.2260 -0.1493 23 1 -0.4850 -0.8369 -0.0715 24 1 3.5688 -3.3632 -0.2800 25 1 5.5307 2.0059 0.4393 26 1 6.3460 1.5561 -1.0694 27 1 7.2905 1.0922 1.7768 28 1 8.0795 2.0390 0.4931 29 1 10.6992 -2.0543 -0.4726 30 1 8.3626 -3.1755 -0.8531 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831114.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = 38.713959 kcal Electronic energy + Delta-G solvation = -16522.752757 eV Core-core repulsion = 13895.260177 eV Total energy + Delta-G solvation = -2627.492581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.26127 -40.94278 -36.52156 -35.89307 -34.47715 -32.46366 -31.16756 -29.13484 -27.41990 -25.48825 -23.93493 -22.66116 -21.37049 -20.76600 -20.00441 -18.53130 -17.68141 -16.70660 -16.44151 -15.88453 -15.47512 -15.15818 -14.72263 -14.58553 -14.32871 -14.19795 -13.71268 -13.19516 -13.10543 -12.91539 -12.88960 -12.41602 -12.22946 -11.74287 -11.53640 -11.34366 -11.01554 -10.38069 -9.73225 -9.41593 -9.14360 -8.59377 -6.80312 0.19811 0.64177 1.37572 1.56380 1.66807 2.00873 2.14016 2.41202 2.44695 2.72894 3.41597 3.50438 3.77969 3.95038 4.10744 4.18941 4.36844 4.48643 4.53838 4.69969 4.76904 4.83398 4.88676 5.07885 5.09170 5.22266 5.26682 5.57129 5.59159 5.84429 6.02239 6.11834 6.29170 6.44395 6.91040 6.99960 7.45978 7.82672 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.007990 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.346622 B = 3503.516966 C = 4155.929629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.015 3.985 3 Si 1.185 2.815 4 H -0.324 1.324 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.479 4.479 8 H 0.078 0.922 9 C 0.182 3.818 10 C -0.065 4.065 11 N -0.424 5.424 12 C -0.009 4.009 13 C 0.131 3.869 14 N -0.554 5.554 15 C -0.065 4.065 16 C -0.026 4.026 17 C 0.006 3.994 18 N -0.516 5.516 19 H 0.435 0.565 20 C -0.010 4.010 21 C -0.198 4.198 22 C -0.139 4.139 23 H 0.286 0.714 24 H 0.149 0.851 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.206 0.794 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.935 4.785 0.759 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.203 4.203 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.211 1.211 6 H -0.217 1.217 7 C -0.512 4.512 8 H 0.096 0.904 9 C 0.057 3.943 10 C -0.234 4.234 11 N -0.136 5.136 12 C -0.147 4.147 13 C -0.015 4.015 14 N -0.277 5.277 15 C -0.103 4.103 16 C -0.064 4.064 17 C -0.112 4.112 18 N -0.110 5.110 19 H 0.275 0.725 20 C -0.141 4.141 21 C -0.222 4.222 22 C -0.147 4.147 23 H 0.097 0.903 24 H 0.167 0.833 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.223 0.777 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.722 6.347 0.854 18.844 hybrid contribution -0.632 -2.548 -0.114 2.628 sum 17.090 3.799 0.740 17.522 Atomic orbital electron populations 1.70658 1.08317 1.33088 1.31253 1.28612 0.95605 1.07904 0.88224 0.81447 0.69907 0.67761 0.79175 1.25690 1.21063 1.21747 1.20719 0.90733 0.96615 1.43113 0.90388 1.19519 0.94922 0.89183 0.90627 1.23216 0.90013 0.98073 1.12077 1.67625 1.08960 1.29568 1.07403 1.19597 0.93726 0.88619 1.12770 1.22619 0.89905 0.96933 0.92055 1.66848 1.08787 1.27896 1.24195 1.20270 0.95400 0.91594 1.03060 1.19870 0.92578 0.94067 0.99920 1.20864 0.84212 0.97735 1.08419 1.41166 1.05641 1.13480 1.50742 0.72483 1.22279 0.99569 0.85102 1.07149 1.20589 0.92404 0.99877 1.09354 1.18154 0.89154 0.96464 1.10901 0.90308 0.83321 0.88777 0.88772 0.89935 0.85622 0.77716 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.18 13.65 21.84 0.30 -43.89 16 2 C 0.02 0.84 5.52 85.29 0.47 1.31 16 3 Si 1.18 56.72 25.45 68.60 1.75 58.46 16 4 H -0.32 -14.96 7.11 99.48 0.71 -14.26 16 5 H -0.28 -13.24 6.95 99.48 0.69 -12.55 16 6 H -0.29 -13.78 6.93 99.48 0.69 -13.09 16 7 C -0.48 -26.70 9.56 23.35 0.22 -26.48 16 8 H 0.08 4.33 8.06 -2.91 -0.02 4.31 16 9 C 0.18 9.92 6.41 40.13 0.26 10.18 16 10 C -0.07 -3.40 10.98 85.40 0.94 -2.46 16 11 N -0.42 -21.56 10.48 -182.28 -1.91 -23.47 16 12 C -0.01 -0.42 6.78 42.07 0.29 -0.13 16 13 C 0.13 5.98 6.63 43.14 0.29 6.27 16 14 N -0.55 -28.61 4.56 -175.68 -0.80 -29.41 16 15 C -0.06 -2.11 5.89 29.63 0.17 -1.93 16 16 C -0.03 -0.63 6.28 29.71 0.19 -0.44 16 17 C 0.01 0.18 7.22 42.26 0.31 0.48 16 18 N -0.52 -10.19 6.00 -180.56 -1.08 -11.27 16 19 H 0.43 4.45 8.96 -92.71 -0.83 3.62 16 20 C -0.01 -0.23 11.91 83.13 0.99 0.76 16 21 C -0.20 -6.54 10.87 22.04 0.24 -6.30 16 22 C -0.14 -5.32 6.17 -20.20 -0.12 -5.45 16 23 H 0.29 14.96 8.72 -92.71 -0.81 14.15 16 24 H 0.15 7.14 8.06 -2.91 -0.02 7.11 16 25 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 26 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -71.08 257.83 2.76 -68.32 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.28 Total: 5.45 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.23 Total: -24.20 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.50 Total: -108.04 kcal Atomic # 14 Polarization: 56.72 SS G_CDS: 1.75 Total: 58.46 kcal Total: -71.08 2.76 -68.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831114.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.036 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds