Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 116.99828 * 2 1 4 4 C 1.38696 * 119.99296 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.03561 * 180.02562 * 4 3 2 6 6 C 1.38626 * 120.02829 * 0.02562 * 5 4 3 7 7 O 1.36037 * 120.00949 * 179.97438 * 6 5 4 8 8 C 1.38879 * 119.98237 * 359.97438 * 6 5 4 9 9 F 1.35104 * 120.02056 * 180.02562 * 8 6 5 10 10 C 1.38316 * 119.96229 * 0.27487 * 8 6 5 11 11 C 1.50700 * 120.01585 * 179.73017 * 10 8 6 12 12 H 1.09003 * 109.47272 * 195.00212 * 11 10 8 13 13 N 1.46901 * 109.46821 * 315.00095 * 11 10 8 14 14 C 1.50703 * 109.47312 * 74.99490 * 11 10 8 15 15 H 1.07999 * 120.00111 * 0.02562 * 14 11 10 16 16 C 1.37870 * 119.99879 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00256 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00022 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46982 * 89.99904 * 18 16 14 20 20 H 1.48495 * 109.47344 * 210.00129 * 18 16 14 21 21 H 1.48499 * 109.46862 * 330.00485 * 18 16 14 22 22 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46775 * 299.99360 * 1 2 3 24 24 H 1.08996 * 109.47135 * 59.99203 * 1 2 3 25 25 H 1.08001 * 119.98678 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.98534 * 179.97438 * 5 4 3 27 27 H 0.96705 * 113.99740 * 269.97257 * 7 6 5 28 28 H 1.00904 * 110.99870 * 296.04724 * 13 11 10 29 29 H 1.00902 * 111.00531 * 59.99877 * 13 11 10 30 30 H 0.97005 * 119.99674 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3747 0.0005 5 6 1.9171 3.6063 0.0000 6 6 3.3013 3.6806 -0.0016 7 8 3.9176 4.8934 -0.0027 8 6 4.0589 2.5166 -0.0021 9 9 5.4080 2.5881 -0.0032 10 6 3.4313 1.2840 -0.0068 11 6 4.2521 0.0202 -0.0136 12 1 3.6172 -0.8241 -0.2825 13 7 5.3388 0.1474 -0.9938 14 6 4.8361 -0.2069 1.3570 15 1 4.6328 0.4936 2.1535 16 6 5.6289 -1.3096 1.5945 17 7 5.8761 -2.1629 0.6248 18 14 6.3522 -1.5915 3.2936 19 1 5.4098 -2.4040 4.1041 20 1 7.6450 -2.3113 3.1681 21 1 6.5766 -0.2832 3.9593 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.2122 2.3178 0.0005 26 1 1.3279 4.5115 0.0000 27 1 4.0951 5.2435 -0.8864 28 1 4.9728 0.2360 -1.9299 29 1 5.9420 0.9237 -0.7664 30 1 6.4336 -2.9389 0.7920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259912632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = -116.723941 kcal Electronic energy + Delta-G solvation = -17675.873245 eV Core-core repulsion = 14578.578395 eV Total energy + Delta-G solvation = -3097.294850 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.92504 -41.20642 -39.25687 -37.42818 -35.90958 -33.61919 -31.12391 -30.01988 -28.10371 -27.79132 -24.82936 -23.16099 -22.20382 -19.35473 -19.20477 -18.73522 -17.89009 -17.09247 -16.91989 -16.65153 -16.39252 -15.94010 -15.71710 -15.47568 -14.79267 -14.47742 -14.36957 -13.78780 -13.57673 -13.10929 -12.95458 -12.73038 -12.60650 -12.30429 -12.08331 -11.70324 -11.48000 -11.24483 -10.55636 -9.69070 -9.08038 -8.88085 -7.99475 -6.20507 0.10773 0.23813 1.38428 1.40114 1.50159 2.34131 2.41903 2.54997 3.12181 3.23524 3.48160 3.81891 4.00461 4.31202 4.34629 4.46123 4.46964 4.51099 4.76543 4.85200 5.03388 5.15793 5.21749 5.53515 5.66129 5.72466 6.14230 6.47718 6.61012 6.78867 7.07512 7.22451 7.49972 9.04247 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.009809 C = 0.007896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.114941 B = 2853.849462 C = 3545.446647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.133 3.867 4 C -0.191 4.191 5 C -0.082 4.082 6 C 0.030 3.970 7 O -0.495 6.495 8 C 0.084 3.916 9 F -0.137 7.137 10 C -0.169 4.169 11 C 0.271 3.729 12 H 0.024 0.976 13 N -0.826 5.826 14 C -0.541 4.541 15 H 0.035 0.965 16 C 0.034 3.966 17 N -0.878 5.878 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.276 1.276 22 H 0.111 0.889 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.174 0.826 26 H 0.178 0.822 27 H 0.405 0.595 28 H 0.307 0.693 29 H 0.327 0.673 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 10.910 -3.676 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.087 3.913 4 C -0.209 4.209 5 C -0.100 4.100 6 C -0.016 4.016 7 O -0.307 6.307 8 C 0.064 3.936 9 F -0.116 7.116 10 C -0.173 4.173 11 C 0.161 3.839 12 H 0.042 0.958 13 N -0.357 5.357 14 C -0.580 4.580 15 H 0.053 0.947 16 C -0.169 4.169 17 N -0.514 5.514 18 Si 0.773 3.227 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.201 1.201 22 H 0.129 0.871 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.192 0.808 26 H 0.195 0.805 27 H 0.263 0.737 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.831 9.750 -2.888 15.600 hybrid contribution 0.471 0.597 0.123 0.770 sum -11.360 10.347 -2.765 15.613 Atomic orbital electron populations 1.23426 0.76205 1.05501 1.02758 1.86225 1.23665 1.26550 1.88131 1.18755 0.90629 0.85773 0.96167 1.21490 1.01767 0.90229 1.07438 1.21293 0.91592 0.99255 0.97846 1.18396 0.91382 0.83292 1.08538 1.84860 1.80018 1.30614 1.35179 1.17954 0.76926 0.93678 1.05045 1.91306 1.29761 1.96629 1.93868 1.20885 0.94010 0.97299 1.05116 1.17602 0.87112 0.87526 0.91656 0.95780 1.59082 1.22292 1.51186 1.03102 1.21034 1.33070 1.08918 0.94957 0.94659 1.25666 0.96061 0.95482 0.99701 1.70231 1.36521 1.12092 1.32521 0.85757 0.78134 0.78031 0.80804 1.19693 1.20482 1.20086 0.87118 0.91174 0.90494 0.80830 0.80517 0.73735 0.88242 0.85725 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -12.33 9.33 -93.33 -0.87 -13.20 16 3 C 0.13 4.98 6.66 22.49 0.15 5.13 16 4 C -0.19 -5.08 9.03 22.36 0.20 -4.87 16 5 C -0.08 -2.06 9.98 22.35 0.22 -1.84 16 6 C 0.03 0.96 6.71 22.52 0.15 1.11 16 7 O -0.49 -13.80 13.37 -93.97 -1.26 -15.06 16 8 C 0.08 3.50 7.01 22.44 0.16 3.66 16 9 F -0.14 -6.22 14.15 44.97 0.64 -5.59 16 10 C -0.17 -7.62 4.89 -19.74 -0.10 -7.72 16 11 C 0.27 14.76 2.66 43.42 0.12 14.87 16 12 H 0.02 1.47 7.14 -2.39 -0.02 1.45 16 13 N -0.83 -43.30 8.42 -174.95 -1.47 -44.78 16 14 C -0.54 -32.49 8.63 25.60 0.22 -32.27 16 15 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 16 C 0.03 2.05 5.39 84.65 0.46 2.51 16 17 N -0.88 -54.28 12.77 21.44 0.27 -54.01 16 18 Si 0.95 46.65 29.54 68.60 2.03 48.68 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.07 1.28 7.66 -2.38 -0.02 1.26 16 24 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 25 H 0.17 3.06 6.29 -2.91 -0.02 3.04 16 26 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.40 6.92 9.07 -74.05 -0.67 6.24 16 28 H 0.31 14.38 9.06 -89.69 -0.81 13.57 16 29 H 0.33 16.85 6.13 -89.69 -0.55 16.30 16 30 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -76.20 264.93 1.21 -74.99 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.82 Total: 26.94 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 2.69 Total: -17.98 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -1.20 Total: -98.79 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -2.13 Total: -28.26 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.64 Total: -5.59 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -76.20 1.21 -74.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259912632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.733 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds