Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99634 * 2 1 4 4 H 1.48506 * 109.47054 * 269.99780 * 3 2 1 5 5 H 1.48494 * 109.47477 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.46948 * 150.00140 * 3 2 1 7 7 C 1.37873 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.38036 * 119.56128 * 124.99863 * 10 9 7 12 12 C 1.39737 * 119.02026 * 179.97438 * 11 10 9 13 13 C 1.48378 * 120.90483 * 180.02562 * 12 11 10 14 14 C 1.39470 * 120.10264 * 180.02562 * 13 12 11 15 15 N 1.31995 * 119.86733 * 180.30267 * 14 13 12 16 16 C 1.32209 * 120.08720 * 359.46457 * 15 14 13 17 17 C 1.38447 * 120.21448 * 0.51308 * 16 15 14 18 18 N 1.32010 * 120.12612 * 359.76893 * 17 16 15 19 19 C 1.39773 * 118.18953 * 0.27084 * 12 11 10 20 20 C 1.37999 * 119.01784 * 359.44374 * 19 12 11 21 21 N 1.31882 * 119.56036 * 304.97735 * 10 9 7 22 22 H 0.97002 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46830 * 59.99798 * 9 7 2 24 24 H 1.08999 * 109.46618 * 300.00247 * 9 7 2 25 25 H 1.08005 * 120.48788 * 0.02562 * 11 10 9 26 26 H 1.08002 * 120.06321 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.88878 * 180.24136 * 16 15 14 28 28 H 1.08001 * 119.93718 * 179.74356 * 17 16 15 29 29 H 1.07999 * 120.49622 * 179.69818 * 19 12 11 30 30 H 1.07996 * 119.55720 * 180.31355 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.1488 -4.6092 0.9857 12 6 3.0623 -5.6666 0.9758 13 6 3.0123 -6.7266 2.0128 14 6 3.9327 -7.7742 1.9872 15 7 3.8803 -8.7179 2.9086 16 6 2.9640 -8.6650 3.8602 17 6 2.0489 -7.6264 3.8893 18 7 2.0901 -6.6811 2.9688 19 6 4.0276 -5.6957 -0.0346 20 6 4.0343 -4.6934 -0.9831 21 7 3.1538 -3.7121 -0.9374 22 1 -0.4850 0.8401 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8903 25 1 1.3896 -4.5481 1.7515 26 1 4.6840 -7.8155 1.2124 27 1 2.9265 -9.4368 4.6147 28 1 1.2997 -7.5899 4.6663 29 1 4.7549 -6.4931 -0.0750 30 1 4.7731 -4.7101 -1.7706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259919798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = 77.899785 kcal Electronic energy + Delta-G solvation = -15590.616683 eV Core-core repulsion = 12964.823327 eV Total energy + Delta-G solvation = -2625.793356 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21508 -39.46685 -34.68417 -33.80805 -33.00320 -31.35546 -30.20579 -27.64119 -25.23785 -24.81843 -23.33068 -22.33402 -20.62682 -17.63494 -17.43507 -16.59360 -16.31431 -15.49326 -15.21290 -14.97929 -14.75545 -14.26188 -13.49504 -13.42585 -12.92300 -12.44598 -12.06495 -11.72931 -11.57456 -11.35350 -11.28073 -10.70910 -10.65730 -10.24787 -9.82382 -9.42277 -9.26791 -8.71398 -8.67598 -8.44923 -8.19611 -6.00960 -4.01730 0.28420 0.91849 1.70089 1.94805 3.35222 3.40596 3.45027 3.61046 3.77424 4.06070 4.26386 4.38936 4.53537 4.58708 4.95826 4.98601 5.05400 5.17950 5.36010 5.40858 5.49114 5.66491 6.03283 6.16988 6.31912 6.45140 6.60721 7.11790 7.23721 7.49118 7.53653 7.61595 7.95568 8.30390 8.76133 9.01225 9.60547 11.10331 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.005080 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.475072 B = 5510.380508 C = 5936.866644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.058 3.942 10 C 0.173 3.827 11 C -0.138 4.138 12 C -0.021 4.021 13 C 0.133 3.867 14 C 0.059 3.941 15 N -0.437 5.437 16 C 0.036 3.964 17 C 0.059 3.941 18 N -0.428 5.428 19 C -0.185 4.185 20 C 0.097 3.903 21 N -0.461 5.461 22 H 0.262 0.738 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.141 0.859 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.128 0.872 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -16.164 5.399 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.020 3.980 10 C 0.037 3.963 11 C -0.159 4.159 12 C -0.031 4.031 13 C -0.005 4.005 14 C -0.102 4.102 15 N -0.150 5.150 16 C -0.123 4.123 17 C -0.102 4.102 18 N -0.143 5.143 19 C -0.206 4.206 20 C -0.061 4.061 21 N -0.171 5.171 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.159 0.841 26 H 0.189 0.811 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.146 0.854 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.859 -15.409 4.783 17.165 hybrid contribution 0.436 0.165 0.758 0.890 sum 6.295 -15.244 5.542 17.399 Atomic orbital electron populations 1.69950 1.05986 1.26799 1.50971 1.24981 0.94892 0.99254 0.95341 0.86496 0.79709 0.83071 0.78161 1.20558 1.21269 1.19943 1.20977 0.93132 0.89452 1.50287 0.92202 1.18374 0.91811 0.88930 0.98843 1.22332 0.92645 0.94101 0.87245 1.22272 0.99502 0.93691 1.00417 1.18611 0.97037 0.93798 0.93610 1.20785 0.91997 0.94341 0.93381 1.23766 0.98457 0.90363 0.97601 1.68430 1.20392 1.24516 1.01709 1.23805 0.92290 0.98945 0.97275 1.23826 0.98635 0.90644 0.97067 1.68454 1.20012 1.24558 1.01267 1.21942 1.00043 1.01765 0.96814 1.22722 0.96706 0.89701 0.96944 1.67651 1.02773 1.22094 1.24537 0.92880 0.93816 0.94386 0.84114 0.81083 0.81309 0.81048 0.85384 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.50 -14.27 8.91 -34.44 -0.31 -14.58 16 8 H 0.06 1.72 7.68 -52.49 -0.40 1.32 16 9 C 0.06 1.50 5.37 -29.03 -0.16 1.35 16 10 C 0.17 3.88 6.12 -82.65 -0.51 3.37 16 11 C -0.14 -2.67 9.26 -39.10 -0.36 -3.04 16 12 C -0.02 -0.35 5.91 -104.59 -0.62 -0.97 16 13 C 0.13 1.93 6.74 -82.77 -0.56 1.37 16 14 C 0.06 0.71 10.63 -17.02 -0.18 0.53 16 15 N -0.44 -5.16 10.49 -12.78 -0.13 -5.29 16 16 C 0.04 0.35 11.22 -17.31 -0.19 0.16 16 17 C 0.06 0.63 11.22 -17.40 -0.20 0.43 16 18 N -0.43 -6.19 9.71 -9.58 -0.09 -6.29 16 19 C -0.18 -2.65 9.50 -39.10 -0.37 -3.02 16 20 C 0.10 1.59 11.17 -17.60 -0.20 1.39 16 21 N -0.46 -9.88 9.94 -9.55 -0.10 -9.98 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 1.01 7.87 -51.93 -0.41 0.60 16 25 H 0.14 2.70 7.54 -52.48 -0.40 2.30 16 26 H 0.17 1.61 6.30 -52.49 -0.33 1.28 16 27 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.30 6.34 -52.49 -0.33 0.97 16 30 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -32.98 272.16 -6.94 -39.92 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -2.70 Total: -2.01 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.74 Total: -11.49 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.41 Total: -47.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.98 -6.94 -39.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.824 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds