Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99634 * 2 1 4 4 H 1.48506 * 109.47054 * 269.99780 * 3 2 1 5 5 H 1.48494 * 109.47477 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.46948 * 150.00140 * 3 2 1 7 7 C 1.37873 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.38036 * 119.56128 * 124.99863 * 10 9 7 12 12 C 1.39737 * 119.02026 * 179.97438 * 11 10 9 13 13 C 1.48378 * 120.90483 * 180.02562 * 12 11 10 14 14 C 1.39470 * 120.10264 * 180.02562 * 13 12 11 15 15 N 1.31995 * 119.86733 * 180.30267 * 14 13 12 16 16 C 1.32209 * 120.08720 * 359.46457 * 15 14 13 17 17 C 1.38447 * 120.21448 * 0.51308 * 16 15 14 18 18 N 1.32010 * 120.12612 * 359.76893 * 17 16 15 19 19 C 1.39773 * 118.18953 * 0.27084 * 12 11 10 20 20 C 1.37999 * 119.01784 * 359.44374 * 19 12 11 21 21 N 1.31882 * 119.56036 * 304.97735 * 10 9 7 22 22 H 0.97002 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46830 * 59.99798 * 9 7 2 24 24 H 1.08999 * 109.46618 * 300.00247 * 9 7 2 25 25 H 1.08005 * 120.48788 * 0.02562 * 11 10 9 26 26 H 1.08002 * 120.06321 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.88878 * 180.24136 * 16 15 14 28 28 H 1.08001 * 119.93718 * 179.74356 * 17 16 15 29 29 H 1.07999 * 120.49622 * 179.69818 * 19 12 11 30 30 H 1.07996 * 119.55720 * 180.31355 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.1488 -4.6092 0.9857 12 6 3.0623 -5.6666 0.9758 13 6 3.0123 -6.7266 2.0128 14 6 3.9327 -7.7742 1.9872 15 7 3.8803 -8.7179 2.9086 16 6 2.9640 -8.6650 3.8602 17 6 2.0489 -7.6264 3.8893 18 7 2.0901 -6.6811 2.9688 19 6 4.0276 -5.6957 -0.0346 20 6 4.0343 -4.6934 -0.9831 21 7 3.1538 -3.7121 -0.9374 22 1 -0.4850 0.8401 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8903 25 1 1.3896 -4.5481 1.7515 26 1 4.6840 -7.8155 1.2124 27 1 2.9265 -9.4368 4.6147 28 1 1.2997 -7.5899 4.6663 29 1 4.7549 -6.4931 -0.0750 30 1 4.7731 -4.7101 -1.7706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259919798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = 54.999570 kcal Electronic energy + Delta-G solvation = -15591.609710 eV Core-core repulsion = 12964.823327 eV Total energy + Delta-G solvation = -2626.786384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16052 -40.83004 -35.82749 -35.40819 -34.42061 -33.07286 -31.28894 -29.48241 -26.36161 -26.01749 -24.98529 -23.61166 -22.09322 -18.72414 -18.45763 -18.33561 -17.63068 -16.74949 -16.64530 -16.39727 -15.94410 -15.65193 -15.01524 -14.51794 -14.35321 -13.97992 -13.67897 -13.42550 -12.90282 -12.65903 -12.63320 -12.47269 -12.45132 -11.79602 -11.55718 -11.34261 -10.63391 -10.30330 -10.02869 -9.82898 -9.71944 -8.20631 -6.30155 -0.71186 0.04059 0.30079 0.75352 1.39291 1.41623 1.52402 2.40732 2.66347 2.82773 3.05346 3.13726 3.26454 3.38387 3.62549 3.67000 3.99070 4.12305 4.22338 4.33105 4.36219 4.53016 4.77102 4.87190 5.00745 5.21029 5.27687 5.37245 5.46927 5.72381 5.84359 6.16135 6.25437 6.74394 6.78326 7.28708 7.37367 8.91010 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.005080 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.475072 B = 5510.380508 C = 5936.866644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.066 3.934 10 C 0.141 3.859 11 C -0.155 4.155 12 C -0.014 4.014 13 C 0.100 3.900 14 C 0.068 3.932 15 N -0.452 5.452 16 C 0.057 3.943 17 C 0.054 3.946 18 N -0.466 5.466 19 C -0.158 4.158 20 C 0.093 3.907 21 N -0.503 5.503 22 H 0.266 0.734 23 H 0.011 0.989 24 H 0.017 0.983 25 H 0.127 0.873 26 H 0.199 0.801 27 H 0.213 0.787 28 H 0.204 0.796 29 H 0.183 0.817 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 -18.337 6.251 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.005 3.995 11 C -0.176 4.176 12 C -0.023 4.023 13 C -0.037 4.037 14 C -0.091 4.091 15 N -0.166 5.166 16 C -0.103 4.103 17 C -0.107 4.107 18 N -0.181 5.181 19 C -0.178 4.178 20 C -0.064 4.064 21 N -0.213 5.213 22 H 0.074 0.926 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.145 0.855 26 H 0.216 0.784 27 H 0.230 0.770 28 H 0.221 0.779 29 H 0.200 0.800 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.312 -17.580 5.621 20.242 hybrid contribution -0.299 0.592 0.610 0.901 sum 8.013 -16.988 6.231 19.790 Atomic orbital electron populations 1.70073 1.07558 1.27933 1.51644 1.25903 0.95825 1.03061 0.94719 0.85404 0.78455 0.78370 0.78534 1.19705 1.20227 1.19310 1.21242 0.92933 0.90954 1.50381 0.92959 1.18037 0.92291 0.90622 0.96217 1.21632 0.93680 0.94366 0.89792 1.22044 1.00851 0.94822 0.99851 1.18886 0.95961 0.92998 0.94476 1.20641 0.93990 0.95166 0.93929 1.24069 0.97850 0.89149 0.98021 1.68569 1.21263 1.24428 1.02343 1.24534 0.90244 0.98793 0.96718 1.24435 0.99567 0.89966 0.96768 1.68359 1.20861 1.26521 1.02361 1.22458 0.99330 1.01753 0.94303 1.23417 0.95961 0.88769 0.98293 1.67471 1.03947 1.24869 1.24984 0.92550 0.97144 0.96497 0.85455 0.78396 0.77048 0.77949 0.79975 0.79169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -31.05 8.91 25.60 0.23 -30.82 16 8 H 0.05 3.14 7.68 -2.91 -0.02 3.12 16 9 C 0.07 3.72 5.37 29.10 0.16 3.88 16 10 C 0.14 6.69 6.12 42.50 0.26 6.95 16 11 C -0.15 -6.33 9.26 22.58 0.21 -6.12 16 12 C -0.01 -0.44 5.91 -19.84 -0.12 -0.56 16 13 C 0.10 2.73 6.74 41.98 0.28 3.01 16 14 C 0.07 1.41 10.63 84.97 0.90 2.32 16 15 N -0.45 -8.93 10.49 -194.33 -2.04 -10.97 16 16 C 0.06 0.87 11.22 84.69 0.95 1.82 16 17 C 0.05 1.00 11.22 84.72 0.95 1.95 16 18 N -0.47 -13.06 9.71 -184.24 -1.79 -14.85 16 19 C -0.16 -4.08 9.50 22.58 0.21 -3.86 16 20 C 0.09 2.90 11.17 84.62 0.95 3.84 16 21 N -0.50 -22.07 9.94 -184.14 -1.83 -23.90 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.02 0.98 7.87 -2.39 -0.02 0.96 16 25 H 0.13 5.34 7.54 -2.91 -0.02 5.32 16 26 H 0.20 2.74 6.30 -2.91 -0.02 2.72 16 27 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 28 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.18 2.66 6.34 -2.91 -0.02 2.64 16 30 H 0.19 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -77.07 272.16 3.26 -73.81 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.16 Total: 2.18 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.45 Total: -16.97 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -5.37 Total: -107.06 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.07 3.26 -73.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.813 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds