Wall clock time and date at job start Mon Mar 30 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32158 * 120.54394 * 2 1 4 4 C 1.31858 * 120.97245 * 180.30526 * 3 2 1 5 5 N 1.31884 * 122.11295 * 359.66089 * 4 3 2 6 6 C 1.32118 * 120.97589 * 0.02562 * 5 4 3 7 7 C 1.39997 * 120.53904 * 179.68702 * 2 1 3 8 8 C 1.47881 * 120.94838 * 0.02562 * 7 2 1 9 9 C 1.39516 * 121.03678 * 244.74277 * 8 7 2 10 10 C 1.38049 * 119.28225 * 179.97438 * 9 8 7 11 11 N 1.32274 * 121.49047 * 359.72259 * 10 9 8 12 12 C 1.31344 * 122.31799 * 0.57398 * 11 10 9 13 13 C 1.40803 * 120.50012 * 359.43143 * 12 11 10 14 14 C 1.40904 * 120.75947 * 180.29703 * 13 12 11 15 15 H 1.08004 * 119.99882 * 204.28166 * 14 13 12 16 16 C 1.40088 * 120.00190 * 24.28103 * 14 13 12 17 17 N 1.30773 * 119.99889 * 17.44243 * 16 14 13 18 18 Si 1.86799 * 120.00255 * 197.44089 * 16 14 13 19 19 H 1.48500 * 109.47085 * 90.00393 * 18 16 14 20 20 H 1.48501 * 109.47132 * 209.99971 * 18 16 14 21 21 H 1.48496 * 109.47171 * 330.00240 * 18 16 14 22 22 H 1.08995 * 109.47288 * 270.30715 * 1 2 3 23 23 H 1.09000 * 109.46687 * 30.30826 * 1 2 3 24 24 H 1.09003 * 109.46813 * 150.30448 * 1 2 3 25 25 H 1.07995 * 118.94074 * 179.67386 * 4 3 2 26 26 H 1.08004 * 120.54060 * 179.97438 * 6 5 4 27 27 H 1.08002 * 120.36698 * 359.95482 * 9 8 7 28 28 H 1.07998 * 119.25913 * 179.97438 * 10 9 8 29 29 H 1.08002 * 119.75185 * 179.71001 * 12 11 10 30 30 H 0.97001 * 119.99664 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1787 1.1382 0.0000 4 6 3.4972 1.1481 -0.0060 5 7 4.2066 0.0363 -0.0057 6 6 3.6175 -1.1463 0.0003 7 6 2.2184 -1.2057 0.0066 8 6 1.5125 -2.5052 0.0131 9 6 1.6169 -3.3751 1.0989 10 6 0.9420 -4.5789 1.0669 11 7 0.1938 -4.9243 0.0322 12 6 0.0573 -4.1550 -1.0235 13 6 0.7056 -2.9067 -1.0868 14 6 0.5579 -2.0743 -2.2141 15 1 1.3169 -1.3425 -2.4481 16 6 -0.5734 -2.1960 -3.0313 17 7 -1.6368 -2.8147 -2.5880 18 14 -0.5630 -1.4744 -4.7543 19 1 -0.0665 -2.4927 -5.7144 20 1 -1.9417 -1.0705 -5.1301 21 1 0.3274 -0.2865 -4.7881 22 1 -0.3633 0.0055 1.0276 23 1 -0.3633 0.8872 -0.5186 24 1 -0.3633 -0.8927 -0.5091 25 1 4.0127 2.0970 -0.0112 26 1 4.2054 -2.0523 0.0001 27 1 2.2194 -3.1098 1.9550 28 1 1.0234 -5.2522 1.9074 29 1 -0.5606 -4.4803 -1.8475 30 1 -2.4202 -2.8986 -3.1537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:36 Heat of formation + Delta-G solvation = 61.675604 kcal Electronic energy + Delta-G solvation = -16666.522691 eV Core-core repulsion = 14040.025802 eV Total energy + Delta-G solvation = -2626.496889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43743 -38.33881 -34.44774 -33.75677 -33.12436 -29.98396 -29.79930 -27.82776 -25.75993 -24.07712 -22.25661 -21.67375 -20.68486 -17.63805 -17.00347 -16.24682 -15.96259 -15.43909 -14.73417 -14.07179 -13.98759 -13.21609 -12.88088 -12.79943 -12.60252 -12.40168 -12.20777 -11.69750 -11.54650 -11.35680 -11.05733 -10.83944 -10.37804 -10.31309 -9.95852 -9.54904 -9.10476 -8.60677 -8.10660 -8.02337 -7.73562 -7.14387 -4.71181 1.41985 1.63951 2.50978 2.63509 2.92525 2.96012 3.03494 3.70046 4.31358 4.38982 4.60328 4.72545 5.12699 5.38223 5.49587 5.80802 5.90717 5.96022 6.12784 6.21580 6.26905 6.48831 6.60581 6.72759 6.82484 6.84516 7.04835 7.11742 7.35261 7.49088 7.66211 7.82531 8.08736 8.44187 8.48642 8.62785 9.56535 9.79700 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.011876 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.960119 B = 2357.128908 C = 3417.293983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.191 3.809 3 N -0.527 5.527 4 C 0.264 3.736 5 N -0.531 5.531 6 C 0.134 3.866 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.115 4.115 10 C -0.047 4.047 11 N -0.475 5.475 12 C 0.056 3.944 13 C 0.082 3.918 14 C -0.435 4.435 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.775 5.775 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.260 1.260 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.185 0.815 26 H 0.160 0.840 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.153 0.847 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 3.595 0.867 4.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.045 3.955 3 N -0.242 5.242 4 C -0.024 4.024 5 N -0.245 5.245 6 C -0.031 4.031 7 C -0.085 4.085 8 C -0.168 4.168 9 C -0.135 4.135 10 C -0.197 4.197 11 N -0.184 5.184 12 C -0.111 4.111 13 C 0.077 3.923 14 C -0.464 4.464 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.398 5.398 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.184 1.184 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.201 0.799 26 H 0.177 0.823 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.170 0.830 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.595 3.612 0.917 4.541 hybrid contribution 0.076 0.452 -0.728 0.860 sum 2.671 4.065 0.189 4.867 Atomic orbital electron populations 1.21025 0.87736 1.05885 1.02454 1.21979 0.97625 0.87051 0.88861 1.68150 1.10115 1.30908 1.15029 1.24638 0.87048 0.96663 0.94047 1.68217 1.42013 0.99224 1.15012 1.23387 0.91778 0.95526 0.92366 1.20296 0.94232 0.95059 0.98915 1.18431 1.08547 0.93415 0.96439 1.21459 0.99858 0.95212 0.96946 1.21589 1.02725 0.96702 0.98721 1.67112 1.14880 1.35388 1.00979 1.23075 1.01679 0.90544 0.95823 1.18417 0.90011 0.92727 0.91110 1.19446 1.04271 1.16344 1.06322 0.90232 1.26004 0.94362 0.93773 1.00218 1.69719 1.02408 1.30796 1.36884 0.86245 0.78859 0.80395 0.81197 1.18796 1.19769 1.18386 0.91315 0.91355 0.86373 0.79857 0.82265 0.88337 0.86225 0.82966 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.57 36.01 0.34 -1.87 16 2 C 0.19 3.85 6.35 -81.79 -0.52 3.33 16 3 N -0.53 -10.07 10.36 -10.46 -0.11 -10.17 16 4 C 0.26 4.54 12.27 -92.02 -1.13 3.41 16 5 N -0.53 -9.61 10.42 -14.23 -0.15 -9.76 16 6 C 0.13 2.51 11.08 -16.75 -0.19 2.32 16 7 C -0.08 -1.65 4.50 -104.62 -0.47 -2.12 16 8 C -0.16 -3.50 4.78 -103.95 -0.50 -4.00 16 9 C -0.11 -2.39 9.85 -39.17 -0.39 -2.77 16 10 C -0.05 -1.02 11.15 -17.43 -0.19 -1.22 16 11 N -0.48 -11.43 10.32 -12.65 -0.13 -11.56 16 12 C 0.06 1.37 9.90 -16.79 -0.17 1.21 16 13 C 0.08 1.95 4.64 -106.40 -0.49 1.46 16 14 C -0.43 -10.12 6.30 -37.88 -0.24 -10.36 16 15 H 0.08 1.90 7.17 -52.48 -0.38 1.52 16 16 C 0.08 1.72 5.16 -17.31 -0.09 1.63 16 17 N -0.77 -17.51 10.95 55.56 0.61 -16.91 16 18 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.12 2.59 4.50 -51.93 -0.23 2.36 16 25 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 26 H 0.16 2.66 8.06 -52.48 -0.42 2.23 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.15 3.80 6.15 -52.49 -0.32 3.48 16 30 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 LS Contribution 263.15 15.07 3.97 3.97 Total: -1.00 -25.55 263.15 -7.47 -33.02 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.60 Total: 8.32 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -4.03 Total: -8.98 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.22 Total: -48.40 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -25.55 -7.47 -33.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.699 kcal (2) G-P(sol) polarization free energy of solvation -25.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds