Wall clock time and date at job start Mon Mar 30 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32158 * 120.54394 * 2 1 4 4 C 1.31858 * 120.97245 * 180.30526 * 3 2 1 5 5 N 1.31884 * 122.11295 * 359.66089 * 4 3 2 6 6 C 1.32118 * 120.97589 * 0.02562 * 5 4 3 7 7 C 1.39997 * 120.53904 * 179.68702 * 2 1 3 8 8 C 1.47881 * 120.94838 * 0.02562 * 7 2 1 9 9 C 1.39516 * 121.03678 * 244.74277 * 8 7 2 10 10 C 1.38049 * 119.28225 * 179.97438 * 9 8 7 11 11 N 1.32274 * 121.49047 * 359.72259 * 10 9 8 12 12 C 1.31344 * 122.31799 * 0.57398 * 11 10 9 13 13 C 1.40803 * 120.50012 * 359.43143 * 12 11 10 14 14 C 1.40904 * 120.75947 * 180.29703 * 13 12 11 15 15 H 1.08004 * 119.99882 * 204.28166 * 14 13 12 16 16 C 1.40088 * 120.00190 * 24.28103 * 14 13 12 17 17 N 1.30773 * 119.99889 * 17.44243 * 16 14 13 18 18 Si 1.86799 * 120.00255 * 197.44089 * 16 14 13 19 19 H 1.48500 * 109.47085 * 90.00393 * 18 16 14 20 20 H 1.48501 * 109.47132 * 209.99971 * 18 16 14 21 21 H 1.48496 * 109.47171 * 330.00240 * 18 16 14 22 22 H 1.08995 * 109.47288 * 270.30715 * 1 2 3 23 23 H 1.09000 * 109.46687 * 30.30826 * 1 2 3 24 24 H 1.09003 * 109.46813 * 150.30448 * 1 2 3 25 25 H 1.07995 * 118.94074 * 179.67386 * 4 3 2 26 26 H 1.08004 * 120.54060 * 179.97438 * 6 5 4 27 27 H 1.08002 * 120.36698 * 359.95482 * 9 8 7 28 28 H 1.07998 * 119.25913 * 179.97438 * 10 9 8 29 29 H 1.08002 * 119.75185 * 179.71001 * 12 11 10 30 30 H 0.97001 * 119.99664 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1787 1.1382 0.0000 4 6 3.4972 1.1481 -0.0060 5 7 4.2066 0.0363 -0.0057 6 6 3.6175 -1.1463 0.0003 7 6 2.2184 -1.2057 0.0066 8 6 1.5125 -2.5052 0.0131 9 6 1.6169 -3.3751 1.0989 10 6 0.9420 -4.5789 1.0669 11 7 0.1938 -4.9243 0.0322 12 6 0.0573 -4.1550 -1.0235 13 6 0.7056 -2.9067 -1.0868 14 6 0.5579 -2.0743 -2.2141 15 1 1.3169 -1.3425 -2.4481 16 6 -0.5734 -2.1960 -3.0313 17 7 -1.6368 -2.8147 -2.5880 18 14 -0.5630 -1.4744 -4.7543 19 1 -0.0665 -2.4927 -5.7144 20 1 -1.9417 -1.0705 -5.1301 21 1 0.3274 -0.2865 -4.7881 22 1 -0.3633 0.0055 1.0276 23 1 -0.3633 0.8872 -0.5186 24 1 -0.3633 -0.8927 -0.5091 25 1 4.0127 2.0970 -0.0112 26 1 4.2054 -2.0523 0.0001 27 1 2.2194 -3.1098 1.9550 28 1 1.0234 -5.2522 1.9074 29 1 -0.5606 -4.4803 -1.8475 30 1 -2.4202 -2.8986 -3.1537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:36 Heat of formation + Delta-G solvation = 48.466967 kcal Electronic energy + Delta-G solvation = -16667.095460 eV Core-core repulsion = 14040.025802 eV Total energy + Delta-G solvation = -2627.069659 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91808 -40.04375 -36.12213 -35.28608 -34.68927 -31.70232 -31.40956 -29.36665 -27.46477 -25.61727 -23.76015 -23.38752 -22.33003 -19.37117 -18.47133 -17.72891 -17.55973 -17.07384 -16.37842 -15.66751 -15.57342 -14.63003 -14.49111 -14.45942 -14.24558 -13.89239 -13.77556 -13.36050 -13.13467 -12.97909 -12.69258 -12.46902 -11.93804 -11.86261 -11.42703 -11.20403 -10.69511 -10.09896 -9.86846 -9.65617 -9.48788 -8.80848 -6.46524 -0.05903 0.14812 0.83521 0.91910 1.37616 1.47923 1.49326 2.13725 2.68672 2.85784 3.22992 3.33552 3.63833 3.66132 3.95152 4.23381 4.27996 4.47839 4.60793 4.70127 4.75037 4.82494 5.02888 5.04999 5.14434 5.30583 5.31421 5.55973 5.69226 5.80439 6.09094 6.12566 6.32231 6.71213 6.74800 7.18467 7.79381 8.15932 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.011876 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.960119 B = 2357.128908 C = 3417.293983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.182 3.818 3 N -0.537 5.537 4 C 0.270 3.730 5 N -0.533 5.533 6 C 0.141 3.859 7 C -0.104 4.104 8 C -0.153 4.153 9 C -0.113 4.113 10 C -0.054 4.054 11 N -0.494 5.494 12 C 0.027 3.973 13 C 0.066 3.934 14 C -0.448 4.448 15 H 0.068 0.932 16 C 0.049 3.951 17 N -0.798 5.798 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.267 1.267 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.226 0.774 26 H 0.178 0.822 27 H 0.128 0.872 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 4.778 1.179 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.037 3.963 3 N -0.252 5.252 4 C -0.017 4.017 5 N -0.247 5.247 6 C -0.024 4.024 7 C -0.109 4.109 8 C -0.162 4.162 9 C -0.133 4.133 10 C -0.206 4.206 11 N -0.203 5.203 12 C -0.138 4.138 13 C 0.061 3.939 14 C -0.476 4.476 15 H 0.086 0.914 16 C -0.170 4.170 17 N -0.422 5.422 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.187 1.187 21 H -0.191 1.191 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.242 0.758 26 H 0.195 0.805 27 H 0.146 0.854 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.730 4.794 1.219 6.195 hybrid contribution -0.199 0.133 -0.713 0.752 sum 3.531 4.926 0.505 6.082 Atomic orbital electron populations 1.20917 0.87867 1.04930 1.02905 1.22049 0.97878 0.87498 0.88925 1.68221 1.11029 1.30263 1.15696 1.25500 0.86609 0.97974 0.91631 1.68346 1.41820 0.99246 1.15296 1.23652 0.91193 0.96569 0.90992 1.20264 0.95025 0.94378 1.01184 1.18656 1.07477 0.94133 0.95979 1.21757 0.99516 0.94557 0.97441 1.22104 1.02040 0.97670 0.98761 1.67073 1.15775 1.35854 1.01549 1.22894 1.03277 0.91488 0.96177 1.18579 0.90696 0.92585 0.92056 1.19392 1.04590 1.16521 1.07146 0.91353 1.26601 0.93688 0.93896 1.02836 1.69747 1.02949 1.31438 1.38105 0.85374 0.79037 0.79303 0.77303 1.18513 1.18653 1.19093 0.90190 0.90503 0.88998 0.75827 0.80537 0.85380 0.83486 0.84471 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 9.57 71.24 0.68 -3.51 16 2 C 0.18 7.12 6.35 42.94 0.27 7.40 16 3 N -0.54 -19.33 10.36 -187.01 -1.94 -21.27 16 4 C 0.27 8.45 12.27 180.84 2.22 10.67 16 5 N -0.53 -17.80 10.42 -198.92 -2.07 -19.87 16 6 C 0.14 4.96 11.08 85.09 0.94 5.91 16 7 C -0.10 -4.13 4.50 -19.86 -0.09 -4.22 16 8 C -0.15 -6.65 4.78 -19.43 -0.09 -6.74 16 9 C -0.11 -4.53 9.85 22.53 0.22 -4.31 16 10 C -0.05 -2.29 11.15 84.58 0.94 -1.35 16 11 N -0.49 -23.96 10.32 -193.94 -2.00 -25.96 16 12 C 0.03 1.36 9.90 85.39 0.85 2.20 16 13 C 0.07 3.16 4.64 -21.01 -0.10 3.07 16 14 C -0.45 -21.21 6.30 23.37 0.15 -21.06 16 15 H 0.07 3.31 7.17 -2.91 -0.02 3.29 16 16 C 0.05 2.19 5.16 85.30 0.44 2.63 16 17 N -0.80 -36.89 10.95 21.85 0.24 -36.66 16 18 Si 0.97 35.05 29.59 68.60 2.03 37.08 16 19 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 22 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 24 H 0.09 4.09 4.50 -2.39 -0.01 4.08 16 25 H 0.23 4.96 8.06 -2.91 -0.02 4.93 16 26 H 0.18 5.47 8.06 -2.91 -0.02 5.44 16 27 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.15 5.29 8.06 -2.91 -0.02 5.27 16 29 H 0.14 7.17 6.15 -2.91 -0.02 7.15 16 30 H 0.30 12.41 8.29 -92.71 -0.77 11.64 16 Total: -1.00 -54.20 263.15 3.86 -50.34 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.17 Total: 25.65 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 6.43 Total: -9.31 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -5.77 Total: -103.76 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -54.20 3.86 -50.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.807 kcal (2) G-P(sol) polarization free energy of solvation -54.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds