Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.32204 * 120.52138 * 2 1 4 4 C 1.31821 * 120.94359 * 179.97438 * 3 2 1 5 5 N 1.31844 * 122.04221 * 359.97438 * 4 3 2 6 6 C 1.32183 * 120.93852 * 359.70240 * 5 4 3 7 7 C 1.39685 * 120.52177 * 179.97438 * 2 1 3 8 8 C 1.48391 * 120.92031 * 0.02945 * 7 2 1 9 9 C 1.40037 * 120.81858 * 309.99211 * 8 7 2 10 10 C 1.38502 * 119.42559 * 180.02562 * 9 8 7 11 11 N 1.31484 * 121.14553 * 0.03130 * 10 9 8 12 12 C 1.33647 * 121.78972 * 359.96991 * 11 10 9 13 13 C 1.41426 * 119.77696 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99912 * 187.07025 * 13 12 11 15 15 C 1.40033 * 119.99947 * 7.07167 * 13 12 11 16 16 N 1.30741 * 120.00144 * 182.56910 * 15 13 12 17 17 Si 1.86809 * 120.00169 * 2.56807 * 15 13 12 18 18 H 1.48499 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46853 * 300.00053 * 17 15 13 20 20 H 1.48506 * 109.46797 * 59.99784 * 17 15 13 21 21 C 1.39300 * 120.82545 * 130.29647 * 8 7 2 22 22 H 1.08997 * 109.46728 * 270.02570 * 1 2 3 23 23 H 1.09000 * 109.46807 * 30.02778 * 1 2 3 24 24 H 1.08995 * 109.46860 * 150.02603 * 1 2 3 25 25 H 1.07997 * 118.98230 * 179.97438 * 4 3 2 26 26 H 1.08002 * 120.52081 * 180.28460 * 6 5 4 27 27 H 1.08004 * 120.28892 * 0.05402 * 9 8 7 28 28 H 1.08007 * 119.43399 * 180.02562 * 10 9 8 29 29 H 0.96999 * 119.99741 * 354.84870 * 16 15 13 30 30 H 1.08005 * 120.58218 * 359.97318 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1389 0.0000 4 6 3.4967 1.1486 0.0005 5 7 4.2044 0.0362 0.0015 6 6 3.6126 -1.1458 0.0080 7 6 2.2165 -1.2033 0.0005 8 6 1.5071 -2.5067 0.0005 9 6 0.4849 -2.7672 0.9214 10 6 -0.1576 -3.9939 0.8959 11 7 0.1759 -4.9183 0.0224 12 6 1.1441 -4.7201 -0.8773 13 6 1.4678 -5.7439 -1.7978 14 1 2.3219 -5.6338 -2.4494 15 6 0.6808 -6.9002 -1.8642 16 7 1.0088 -7.8683 -2.6793 17 14 -0.8378 -7.0596 -0.7880 18 1 -1.4920 -8.3676 -1.0457 19 1 -0.4428 -6.9761 0.6410 20 1 -1.7862 -5.9614 -1.1045 21 6 1.8458 -3.5036 -0.9116 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5143 24 1 -0.3633 -0.8902 -0.5134 25 1 4.0130 2.0971 0.0001 26 1 4.1990 -2.0527 0.0134 27 1 0.1996 -2.0178 1.6451 28 1 -0.9464 -4.1948 1.6059 29 1 1.7529 -7.7558 -3.2913 30 1 2.6316 -3.3428 -1.6348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966268.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = 54.365643 kcal Electronic energy + Delta-G solvation = -16132.958346 eV Core-core repulsion = 13506.144474 eV Total energy + Delta-G solvation = -2626.813873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92327 -38.68790 -34.63924 -34.00287 -33.36097 -30.59923 -30.11137 -28.35153 -25.58442 -24.63397 -22.72951 -21.81025 -20.87164 -18.41561 -17.44282 -16.68721 -16.03360 -15.32461 -14.83445 -14.65358 -14.02780 -13.60384 -13.11552 -12.97717 -12.85018 -12.78782 -12.54786 -12.29964 -12.10182 -11.01277 -10.88799 -10.77219 -10.43299 -10.16145 -9.74791 -9.66549 -9.39155 -9.12024 -8.31675 -8.13410 -7.81393 -7.35713 -4.93307 0.87056 1.16836 2.37735 2.39495 3.55538 3.59277 3.88096 3.96530 4.13902 4.29221 4.36326 4.49517 4.61586 4.91335 5.15832 5.39619 5.49776 5.57792 5.63085 5.66428 5.93734 6.04323 6.15806 6.26608 6.37515 6.51359 6.74422 7.02025 7.08388 7.20449 7.32700 7.46231 7.92887 8.11997 8.17575 8.48403 9.32054 9.88428 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039827 B = 0.006572 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.875115 B = 4259.464980 C = 4716.813093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.182 3.818 3 N -0.523 5.523 4 C 0.279 3.721 5 N -0.525 5.525 6 C 0.155 3.845 7 C -0.126 4.126 8 C 0.018 3.982 9 C -0.301 4.301 10 C 0.156 3.844 11 N -0.572 5.572 12 C 0.249 3.751 13 C -0.467 4.467 14 H 0.082 0.918 15 C 0.042 3.958 16 N -0.798 5.798 17 Si 1.155 2.845 18 H -0.332 1.332 19 H -0.278 1.278 20 H -0.293 1.293 21 C -0.237 4.237 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.192 0.808 26 H 0.169 0.831 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.284 0.716 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 11.084 4.605 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.036 3.964 3 N -0.238 5.238 4 C -0.009 4.009 5 N -0.239 5.239 6 C -0.010 4.010 7 C -0.130 4.130 8 C 0.011 3.989 9 C -0.324 4.324 10 C -0.005 4.005 11 N -0.291 5.291 12 C 0.127 3.873 13 C -0.499 4.499 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.419 5.419 17 Si 0.990 3.010 18 H -0.265 1.265 19 H -0.206 1.206 20 H -0.221 1.221 21 C -0.260 4.260 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.209 0.791 26 H 0.186 0.814 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.905 10.113 4.869 11.260 hybrid contribution 1.686 1.203 -0.588 2.153 sum 0.781 11.315 4.281 12.123 Atomic orbital electron populations 1.20859 0.87634 1.04087 1.03604 1.21854 0.97667 0.87195 0.89662 1.68200 1.10342 1.30274 1.14971 1.24837 0.86845 0.96979 0.92229 1.68351 1.41828 0.99129 1.14608 1.23416 0.91412 0.96038 0.90114 1.20645 0.95273 0.95222 1.01846 1.18319 0.94755 0.90041 0.95746 1.21131 1.04958 1.00177 1.06170 1.22062 0.95476 0.88821 0.94181 1.66553 1.20843 1.32270 1.09411 1.18563 0.87644 0.91305 0.89817 1.20840 1.11711 1.01379 1.15926 0.89959 1.27891 1.03088 0.90082 0.96902 1.70652 1.25304 1.31445 1.14528 0.81805 0.71599 0.71900 0.75689 1.26530 1.20589 1.22077 1.21687 1.05920 0.94929 1.03433 0.89707 0.90593 0.89175 0.79138 0.81432 0.87578 0.85119 0.90475 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 8.74 36.01 0.31 -1.08 16 2 C 0.18 2.87 6.83 -81.89 -0.56 2.31 16 3 N -0.52 -7.96 10.36 -10.54 -0.11 -8.07 16 4 C 0.28 3.90 12.27 -92.09 -1.13 2.77 16 5 N -0.53 -8.11 10.42 -14.31 -0.15 -8.26 16 6 C 0.16 2.50 10.88 -16.84 -0.18 2.32 16 7 C -0.13 -2.14 5.53 -104.62 -0.58 -2.72 16 8 C 0.02 0.35 4.81 -104.65 -0.50 -0.15 16 9 C -0.30 -5.56 8.15 -38.81 -0.32 -5.88 16 10 C 0.16 3.14 11.17 -17.60 -0.20 2.94 16 11 N -0.57 -13.63 4.54 -11.20 -0.05 -13.69 16 12 C 0.25 6.13 6.39 -85.02 -0.54 5.58 16 13 C -0.47 -12.19 9.58 -37.70 -0.36 -12.55 16 14 H 0.08 2.14 8.05 -52.49 -0.42 1.72 16 15 C 0.04 1.11 5.52 -17.34 -0.10 1.01 16 16 N -0.80 -21.12 13.65 55.55 0.76 -20.37 16 17 Si 1.16 27.37 25.56 -169.99 -4.34 23.03 16 18 H -0.33 -7.82 7.11 56.52 0.40 -7.42 16 19 H -0.28 -6.53 6.67 56.52 0.38 -6.16 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.24 -5.16 9.40 -38.34 -0.36 -5.52 16 22 H 0.08 1.00 7.64 -51.93 -0.40 0.60 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 1.31 6.59 -51.93 -0.34 0.97 16 25 H 0.19 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.11 1.69 7.05 -52.48 -0.37 1.32 16 28 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.28 7.17 8.72 -40.82 -0.36 6.82 16 30 H 0.11 2.22 8.06 -52.48 -0.42 1.79 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -28.12 263.11 -7.27 -35.39 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.82 Total: -1.03 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -4.51 Total: -10.96 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.45 Total: -50.38 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.34 Total: 23.03 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.12 -7.27 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966268.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.752 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds