Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.32204 * 120.52138 * 2 1 4 4 C 1.31821 * 120.94359 * 179.97438 * 3 2 1 5 5 N 1.31844 * 122.04221 * 359.97438 * 4 3 2 6 6 C 1.32183 * 120.93852 * 359.70240 * 5 4 3 7 7 C 1.39685 * 120.52177 * 179.97438 * 2 1 3 8 8 C 1.48391 * 120.92031 * 0.02945 * 7 2 1 9 9 C 1.40037 * 120.81858 * 309.99211 * 8 7 2 10 10 C 1.38502 * 119.42559 * 180.02562 * 9 8 7 11 11 N 1.31484 * 121.14553 * 0.03130 * 10 9 8 12 12 C 1.33647 * 121.78972 * 359.96991 * 11 10 9 13 13 C 1.41426 * 119.77696 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99912 * 187.07025 * 13 12 11 15 15 C 1.40033 * 119.99947 * 7.07167 * 13 12 11 16 16 N 1.30741 * 120.00144 * 182.56910 * 15 13 12 17 17 Si 1.86809 * 120.00169 * 2.56807 * 15 13 12 18 18 H 1.48499 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46853 * 300.00053 * 17 15 13 20 20 H 1.48506 * 109.46797 * 59.99784 * 17 15 13 21 21 C 1.39300 * 120.82545 * 130.29647 * 8 7 2 22 22 H 1.08997 * 109.46728 * 270.02570 * 1 2 3 23 23 H 1.09000 * 109.46807 * 30.02778 * 1 2 3 24 24 H 1.08995 * 109.46860 * 150.02603 * 1 2 3 25 25 H 1.07997 * 118.98230 * 179.97438 * 4 3 2 26 26 H 1.08002 * 120.52081 * 180.28460 * 6 5 4 27 27 H 1.08004 * 120.28892 * 0.05402 * 9 8 7 28 28 H 1.08007 * 119.43399 * 180.02562 * 10 9 8 29 29 H 0.96999 * 119.99741 * 354.84870 * 16 15 13 30 30 H 1.08005 * 120.58218 * 359.97318 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1389 0.0000 4 6 3.4967 1.1486 0.0005 5 7 4.2044 0.0362 0.0015 6 6 3.6126 -1.1458 0.0080 7 6 2.2165 -1.2033 0.0005 8 6 1.5071 -2.5067 0.0005 9 6 0.4849 -2.7672 0.9214 10 6 -0.1576 -3.9939 0.8959 11 7 0.1759 -4.9183 0.0224 12 6 1.1441 -4.7201 -0.8773 13 6 1.4678 -5.7439 -1.7978 14 1 2.3219 -5.6338 -2.4494 15 6 0.6808 -6.9002 -1.8642 16 7 1.0088 -7.8683 -2.6793 17 14 -0.8378 -7.0596 -0.7880 18 1 -1.4920 -8.3676 -1.0457 19 1 -0.4428 -6.9761 0.6410 20 1 -1.7862 -5.9614 -1.1045 21 6 1.8458 -3.5036 -0.9116 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5143 24 1 -0.3633 -0.8902 -0.5134 25 1 4.0130 2.0971 0.0001 26 1 4.1990 -2.0527 0.0134 27 1 0.1996 -2.0178 1.6451 28 1 -0.9464 -4.1948 1.6059 29 1 1.7529 -7.7558 -3.2913 30 1 2.6316 -3.3428 -1.6348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966268.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = 38.626768 kcal Electronic energy + Delta-G solvation = -16133.640835 eV Core-core repulsion = 13506.144474 eV Total energy + Delta-G solvation = -2627.496362 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14953 -40.37215 -36.14610 -35.45935 -34.87212 -32.33764 -31.53433 -29.55863 -27.36761 -25.97450 -23.92498 -23.40233 -22.55076 -20.25632 -18.66713 -17.84174 -17.60866 -16.92982 -16.45190 -15.96842 -15.78067 -14.79385 -14.67070 -14.56152 -14.34690 -14.12980 -14.09160 -13.87683 -13.26689 -12.63095 -12.57355 -12.32122 -11.79248 -11.62425 -11.60452 -11.31562 -11.07968 -10.33423 -9.90254 -9.79265 -9.65019 -9.24660 -6.84318 -0.39432 -0.04184 0.66313 0.78184 1.64395 1.74009 2.10172 2.48956 2.61677 2.72066 3.04447 3.16869 3.40713 3.50903 3.54521 3.96174 4.00314 4.36461 4.48337 4.53497 4.60516 4.66358 4.71091 4.87684 5.05583 5.09830 5.29053 5.36928 5.43346 5.55771 5.74708 5.92356 6.00334 6.33103 6.63409 7.00415 7.56431 7.95412 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039827 B = 0.006572 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.875115 B = 4259.464980 C = 4716.813093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.187 3.813 3 N -0.530 5.530 4 C 0.287 3.713 5 N -0.537 5.537 6 C 0.156 3.844 7 C -0.153 4.153 8 C 0.033 3.967 9 C -0.269 4.269 10 C 0.139 3.861 11 N -0.592 5.592 12 C 0.240 3.760 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.831 5.831 17 Si 1.190 2.810 18 H -0.334 1.334 19 H -0.274 1.274 20 H -0.291 1.291 21 C -0.255 4.255 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.231 0.769 26 H 0.172 0.828 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.279 0.721 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 14.196 6.771 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.040 3.960 3 N -0.245 5.245 4 C 0.000 4.000 5 N -0.251 5.251 6 C -0.009 4.009 7 C -0.157 4.157 8 C 0.025 3.975 9 C -0.291 4.291 10 C -0.020 4.020 11 N -0.312 5.312 12 C 0.116 3.884 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.202 4.202 16 N -0.455 5.455 17 Si 1.022 2.978 18 H -0.268 1.268 19 H -0.202 1.202 20 H -0.219 1.219 21 C -0.277 4.277 22 H 0.125 0.875 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.247 0.753 26 H 0.189 0.811 27 H 0.162 0.838 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.706 13.248 7.051 15.104 hybrid contribution 1.989 0.643 -1.082 2.354 sum 0.283 13.890 5.969 15.121 Atomic orbital electron populations 1.20934 0.85971 1.04232 1.04995 1.22208 0.98822 0.86777 0.88173 1.68344 1.10833 1.29703 1.15587 1.25684 0.86755 0.97954 0.89584 1.68455 1.41978 0.99246 1.15396 1.23540 0.91345 0.96737 0.89309 1.20506 0.95625 0.94574 1.04975 1.18500 0.94287 0.90324 0.94345 1.21630 1.02540 0.99989 1.04903 1.22782 0.96440 0.88786 0.93971 1.66478 1.20780 1.33962 1.09945 1.18635 0.88276 0.91763 0.89701 1.20766 1.12512 1.03052 1.17995 0.91977 1.28616 1.04291 0.90036 0.97223 1.70677 1.26351 1.32201 1.16234 0.81354 0.69938 0.71562 0.74958 1.26840 1.20186 1.21947 1.21700 1.06314 0.95064 1.04622 0.87481 0.89028 0.90499 0.75324 0.81109 0.83758 0.81311 0.90998 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 8.74 71.24 0.62 -1.72 16 2 C 0.19 5.19 6.83 42.86 0.29 5.48 16 3 N -0.53 -14.07 10.36 -187.27 -1.94 -16.01 16 4 C 0.29 6.94 12.27 180.86 2.22 9.16 16 5 N -0.54 -15.07 10.42 -199.19 -2.08 -17.15 16 6 C 0.16 4.69 10.88 85.00 0.92 5.61 16 7 C -0.15 -4.78 5.53 -19.86 -0.11 -4.89 16 8 C 0.03 1.19 4.81 -19.88 -0.10 1.10 16 9 C -0.27 -8.84 8.15 22.77 0.19 -8.65 16 10 C 0.14 5.15 11.17 84.81 0.95 6.09 16 11 N -0.59 -27.54 4.54 -189.36 -0.86 -28.40 16 12 C 0.24 11.95 6.39 40.20 0.26 12.21 16 13 C -0.51 -27.98 9.58 23.49 0.23 -27.75 16 14 H 0.06 3.49 8.05 -2.91 -0.02 3.47 16 15 C 0.01 0.79 5.52 85.29 0.47 1.26 16 16 N -0.83 -46.25 13.65 21.84 0.30 -45.95 16 17 Si 1.19 56.26 25.56 68.60 1.75 58.01 16 18 H -0.33 -15.69 7.11 99.48 0.71 -14.99 16 19 H -0.27 -12.59 6.67 99.48 0.66 -11.93 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 C -0.25 -11.08 9.40 23.07 0.22 -10.86 16 22 H 0.11 1.94 7.64 -2.39 -0.02 1.93 16 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 1.95 6.59 -2.39 -0.02 1.94 16 25 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.17 4.88 8.06 -2.91 -0.02 4.86 16 27 H 0.14 3.72 7.05 -2.91 -0.02 3.70 16 28 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.28 15.09 8.72 -92.71 -0.81 14.28 16 30 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -61.78 263.11 4.41 -57.38 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.08 Total: 5.07 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 6.16 Total: -12.94 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.58 Total: -107.51 kcal Atomic # 14 Polarization: 56.26 SS G_CDS: 1.75 Total: 58.01 kcal Total: -61.78 4.41 -57.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966268.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.002 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds