Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35955 * 116.99684 * 2 1 4 4 C 1.38746 * 120.03487 * 359.72862 * 3 2 1 5 5 C 1.38186 * 120.06427 * 179.72181 * 4 3 2 6 6 C 1.50694 * 119.92703 * 180.27281 * 5 4 3 7 7 H 1.09000 * 109.47737 * 340.27497 * 6 5 4 8 8 N 1.46903 * 109.47227 * 220.27440 * 6 5 4 9 9 C 1.50701 * 109.47310 * 100.27826 * 6 5 4 10 10 H 1.08003 * 119.99733 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00134 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00305 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00021 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.46836 * 59.99680 * 13 11 9 15 15 H 1.48494 * 109.47304 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47016 * 300.00432 * 13 11 9 17 17 C 1.38213 * 120.13639 * 0.55136 * 5 4 3 18 18 C 1.38706 * 120.07357 * 359.72122 * 17 5 4 19 19 O 1.35954 * 120.03764 * 179.97438 * 18 17 5 20 20 C 1.38755 * 120.03050 * 179.97438 * 3 2 1 21 21 F 1.35098 * 120.07038 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47103 * 60.00476 * 1 2 3 23 23 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00036 * 1 2 3 25 25 H 1.07995 * 119.97006 * 359.96907 * 4 3 2 26 26 H 1.00896 * 111.00321 * 176.04983 * 8 6 5 27 27 H 1.00900 * 110.99777 * 300.00421 * 8 6 5 28 28 H 0.96996 * 120.00388 * 180.02562 * 12 11 9 29 29 H 1.08009 * 119.96644 * 179.70475 * 17 5 4 30 30 H 0.96695 * 113.99866 * 270.02270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2912 2.3754 -0.0057 5 6 1.9178 3.6070 0.0001 6 6 1.0947 4.8693 0.0001 7 1 0.0873 4.6464 -0.3514 8 7 1.7160 5.8591 -0.8901 9 6 1.0270 5.4249 1.3993 10 1 1.5294 4.9147 2.2078 11 6 0.3237 6.5846 1.6474 12 7 -0.2885 7.2057 0.6630 13 14 0.2392 7.2729 3.3819 14 1 1.6116 7.5759 3.8615 15 1 -0.5718 8.5168 3.3819 16 1 -0.3897 6.2724 4.2813 17 6 3.2978 3.6835 0.0001 18 6 4.0582 2.5234 0.0001 19 8 5.4156 2.5995 -0.0005 20 6 3.4318 1.2848 0.0005 21 9 4.1697 0.1531 0.0016 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2127 2.3189 -0.0106 26 1 1.1491 6.6910 -0.9576 27 1 2.6515 6.0827 -0.5852 28 1 -0.7830 8.0217 0.8374 29 1 3.7847 4.6476 -0.0002 30 1 5.8079 2.6216 -0.8840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -105.023862 kcal Electronic energy + Delta-G solvation = -17211.204325 eV Core-core repulsion = 14114.416829 eV Total energy + Delta-G solvation = -3096.787496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.33018 -39.78836 -38.18437 -36.43558 -34.14201 -31.51703 -29.25559 -29.11965 -27.01349 -25.97812 -23.18167 -22.09146 -20.46128 -18.09627 -17.21305 -16.81189 -16.68132 -16.23510 -15.83287 -15.10594 -14.79714 -14.41081 -14.22720 -14.00115 -13.23083 -13.04689 -12.87187 -12.15906 -11.90446 -11.63518 -11.37010 -11.21188 -10.91122 -10.81850 -10.54287 -10.51305 -10.00791 -9.77327 -8.75889 -8.16965 -7.74683 -7.32365 -6.20515 -4.37833 1.50939 1.73283 3.18646 3.23855 3.27425 3.30881 3.96490 4.26365 4.46078 4.73313 5.01914 5.15603 5.29134 5.31967 5.49153 5.56727 5.79275 5.89155 6.35696 6.40900 6.49359 6.74082 6.81216 6.98928 7.50093 7.55658 7.64106 7.87525 7.94698 8.52903 8.79337 8.98074 9.34541 10.77343 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.007323 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.683490 B = 3822.437890 C = 4275.448018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.105 3.895 4 C -0.191 4.191 5 C 0.021 3.979 6 C 0.240 3.760 7 H 0.051 0.949 8 N -0.850 5.850 9 C -0.548 4.548 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.139 4.139 18 C 0.104 3.896 19 O -0.488 6.488 20 C 0.012 3.988 21 F -0.139 7.139 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.136 0.864 26 H 0.358 0.642 27 H 0.313 0.687 28 H 0.268 0.732 29 H 0.137 0.863 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -8.281 -2.931 9.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.059 3.941 4 C -0.210 4.210 5 C 0.020 3.980 6 C 0.130 3.870 7 H 0.069 0.931 8 N -0.380 5.380 9 C -0.588 4.588 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.531 5.531 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.158 4.158 18 C 0.058 3.942 19 O -0.298 6.298 20 C -0.009 4.009 21 F -0.118 7.118 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.154 0.846 26 H 0.175 0.825 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.155 0.845 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.792 -8.906 -2.948 9.787 hybrid contribution -0.140 0.954 1.415 1.712 sum 2.652 -7.951 -1.533 8.521 Atomic orbital electron populations 1.23077 0.78154 1.03563 1.01988 1.86050 1.21572 1.26180 1.89130 1.18750 0.90172 0.85412 0.99801 1.21078 1.00360 0.90780 1.08810 1.20265 0.93268 0.95824 0.88642 1.18037 0.92231 0.85243 0.91489 0.93086 1.59543 1.06216 1.18801 1.53443 1.21740 1.33486 1.09113 0.94453 0.92407 1.25006 0.94266 0.96591 0.97595 1.69719 1.33333 1.18599 1.31440 0.86531 0.78313 0.78297 0.84200 1.20060 1.21098 1.20082 1.21058 0.93702 0.97245 1.03828 1.18134 0.83220 0.90246 1.02557 1.84840 1.15634 1.95993 1.33306 1.17121 0.86194 0.82290 1.15263 1.91412 1.76534 1.48912 1.94893 0.92370 0.88457 0.92236 0.84592 0.82541 0.87730 0.92225 0.84491 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.26 10.36 -19.60 -0.20 -5.47 16 3 C 0.10 1.92 6.69 -39.20 -0.26 1.66 16 4 C -0.19 -3.60 8.66 -39.41 -0.34 -3.94 16 5 C 0.02 0.44 4.89 -104.65 -0.51 -0.07 16 6 C 0.24 5.64 2.95 -70.02 -0.21 5.43 16 7 H 0.05 1.30 8.00 -51.93 -0.42 0.88 16 8 N -0.85 -19.08 9.02 -6.65 -0.06 -19.14 16 9 C -0.55 -14.12 8.70 -34.44 -0.30 -14.42 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 11 C 0.07 1.77 5.38 -17.82 -0.10 1.67 16 12 N -0.89 -23.52 11.54 55.43 0.64 -22.88 16 13 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.14 -2.68 9.22 -39.42 -0.36 -3.05 16 18 C 0.10 1.88 6.71 -39.20 -0.26 1.62 16 19 O -0.49 -7.71 13.37 -19.60 -0.26 -7.97 16 20 C 0.01 0.22 7.32 -39.18 -0.29 -0.07 16 21 F -0.14 -2.61 16.95 2.25 0.04 -2.58 16 22 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 25 H 0.14 2.35 6.27 -52.49 -0.33 2.02 16 26 H 0.36 8.64 7.08 -39.29 -0.28 8.36 16 27 H 0.31 6.66 7.33 -39.29 -0.29 6.37 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.14 2.56 6.66 -52.48 -0.35 2.21 16 30 H 0.39 4.04 9.06 45.56 0.41 4.46 16 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -28.80 266.32 -4.50 -33.30 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -2.01 Total: 15.21 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.64 Total: -9.84 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.58 Total: -42.02 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.46 Total: -13.43 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.80 -4.50 -33.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.724 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds