Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35955 * 116.99684 * 2 1 4 4 C 1.38746 * 120.03487 * 359.72862 * 3 2 1 5 5 C 1.38186 * 120.06427 * 179.72181 * 4 3 2 6 6 C 1.50694 * 119.92703 * 180.27281 * 5 4 3 7 7 H 1.09000 * 109.47737 * 340.27497 * 6 5 4 8 8 N 1.46903 * 109.47227 * 220.27440 * 6 5 4 9 9 C 1.50701 * 109.47310 * 100.27826 * 6 5 4 10 10 H 1.08003 * 119.99733 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00134 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00305 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00021 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.46836 * 59.99680 * 13 11 9 15 15 H 1.48494 * 109.47304 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47016 * 300.00432 * 13 11 9 17 17 C 1.38213 * 120.13639 * 0.55136 * 5 4 3 18 18 C 1.38706 * 120.07357 * 359.72122 * 17 5 4 19 19 O 1.35954 * 120.03764 * 179.97438 * 18 17 5 20 20 C 1.38755 * 120.03050 * 179.97438 * 3 2 1 21 21 F 1.35098 * 120.07038 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47103 * 60.00476 * 1 2 3 23 23 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00036 * 1 2 3 25 25 H 1.07995 * 119.97006 * 359.96907 * 4 3 2 26 26 H 1.00896 * 111.00321 * 176.04983 * 8 6 5 27 27 H 1.00900 * 110.99777 * 300.00421 * 8 6 5 28 28 H 0.96996 * 120.00388 * 180.02562 * 12 11 9 29 29 H 1.08009 * 119.96644 * 179.70475 * 17 5 4 30 30 H 0.96695 * 113.99866 * 270.02270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2912 2.3754 -0.0057 5 6 1.9178 3.6070 0.0001 6 6 1.0947 4.8693 0.0001 7 1 0.0873 4.6464 -0.3514 8 7 1.7160 5.8591 -0.8901 9 6 1.0270 5.4249 1.3993 10 1 1.5294 4.9147 2.2078 11 6 0.3237 6.5846 1.6474 12 7 -0.2885 7.2057 0.6630 13 14 0.2392 7.2729 3.3819 14 1 1.6116 7.5759 3.8615 15 1 -0.5718 8.5168 3.3819 16 1 -0.3897 6.2724 4.2813 17 6 3.2978 3.6835 0.0001 18 6 4.0582 2.5234 0.0001 19 8 5.4156 2.5995 -0.0005 20 6 3.4318 1.2848 0.0005 21 9 4.1697 0.1531 0.0016 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2127 2.3189 -0.0106 26 1 1.1491 6.6910 -0.9576 27 1 2.6515 6.0827 -0.5852 28 1 -0.7830 8.0217 0.8374 29 1 3.7847 4.6476 -0.0002 30 1 5.8079 2.6216 -0.8840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -126.783957 kcal Electronic energy + Delta-G solvation = -17212.147913 eV Core-core repulsion = 14114.416829 eV Total energy + Delta-G solvation = -3097.731085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.79039 -41.18152 -39.49557 -37.93435 -35.83972 -33.36136 -30.77566 -30.53482 -28.25824 -27.79124 -24.87658 -23.46684 -22.03815 -19.52501 -18.67199 -18.55790 -18.15151 -17.69475 -17.17708 -16.80182 -16.20888 -16.02861 -15.58372 -15.33034 -14.86054 -14.72536 -14.51702 -13.58652 -13.48522 -13.02495 -12.93047 -12.84149 -12.62915 -12.40111 -12.12129 -11.97456 -11.66631 -11.47175 -10.71868 -9.63998 -9.26396 -9.13215 -8.14517 -6.40012 0.06334 0.25836 1.39063 1.40968 1.48226 2.08178 2.33591 2.54947 3.03370 3.10380 3.36621 3.81935 3.84501 4.27534 4.38069 4.39671 4.44174 4.64580 4.71298 4.92297 4.99768 5.15866 5.20664 5.53651 5.62855 5.79998 6.02141 6.24282 6.60024 6.72404 6.88760 7.09890 7.36399 8.79792 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.007323 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.683490 B = 3822.437890 C = 4275.448018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.112 3.888 4 C -0.195 4.195 5 C 0.003 3.997 6 C 0.244 3.756 7 H 0.025 0.975 8 N -0.841 5.841 9 C -0.562 4.562 10 H 0.047 0.953 11 C 0.029 3.971 12 N -0.911 5.911 13 Si 0.955 3.045 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.275 1.275 17 C -0.147 4.147 18 C 0.119 3.881 19 O -0.492 6.492 20 C -0.002 4.002 21 F -0.139 7.139 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.060 0.940 25 H 0.146 0.854 26 H 0.348 0.652 27 H 0.320 0.680 28 H 0.269 0.731 29 H 0.139 0.861 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -8.966 -2.609 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.065 3.935 4 C -0.214 4.214 5 C 0.002 3.998 6 C 0.134 3.866 7 H 0.043 0.957 8 N -0.370 5.370 9 C -0.601 4.601 10 H 0.065 0.935 11 C -0.172 4.172 12 N -0.550 5.550 13 Si 0.781 3.219 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.201 1.201 17 C -0.166 4.166 18 C 0.073 3.927 19 O -0.305 6.305 20 C -0.022 4.022 21 F -0.118 7.118 22 H 0.084 0.916 23 H 0.149 0.851 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.163 0.837 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.143 -9.605 -2.647 10.447 hybrid contribution -0.228 1.085 1.276 1.691 sum 2.914 -8.520 -1.371 9.108 Atomic orbital electron populations 1.23434 0.75799 1.05996 1.02451 1.86054 1.23969 1.25224 1.88689 1.18749 0.90195 0.85837 0.98704 1.21117 1.00989 0.90405 1.08903 1.20078 0.93793 0.95262 0.90639 1.17836 0.91704 0.86626 0.90416 0.95679 1.59501 1.06303 1.18114 1.53128 1.21938 1.33507 1.09401 0.95280 0.93488 1.25644 0.94045 0.96889 1.00667 1.69803 1.33636 1.18815 1.32774 0.85662 0.78186 0.77680 0.80417 1.19941 1.20572 1.20077 1.21032 0.93235 0.97831 1.04547 1.17998 0.84048 0.89558 1.01054 1.84774 1.14276 1.95822 1.35596 1.17321 0.86596 0.82494 1.15793 1.91406 1.76540 1.48937 1.94954 0.91563 0.85123 0.92104 0.83604 0.83667 0.86956 0.92123 0.84331 0.72700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -10.28 10.36 -93.04 -0.96 -11.25 16 3 C 0.11 3.96 6.69 22.52 0.15 4.11 16 4 C -0.19 -7.24 8.66 22.38 0.19 -7.04 16 5 C 0.00 0.14 4.89 -19.88 -0.10 0.04 16 6 C 0.24 11.60 2.95 43.42 0.13 11.72 16 7 H 0.03 1.31 8.00 -2.39 -0.02 1.29 16 8 N -0.84 -37.93 9.02 -174.95 -1.58 -39.50 16 9 C -0.56 -29.03 8.70 25.60 0.22 -28.81 16 10 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 11 C 0.03 1.47 5.38 84.66 0.46 1.93 16 12 N -0.91 -48.07 11.54 21.45 0.25 -47.82 16 13 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 C -0.15 -5.57 9.22 22.38 0.21 -5.36 16 18 C 0.12 4.15 6.71 22.52 0.15 4.30 16 19 O -0.49 -14.43 13.37 -93.04 -1.24 -15.68 16 20 C 0.00 -0.06 7.32 22.53 0.16 0.10 16 21 F -0.14 -5.02 16.95 44.97 0.76 -4.26 16 22 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 23 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.06 1.35 7.67 -2.39 -0.02 1.33 16 25 H 0.15 4.98 6.27 -2.91 -0.02 4.96 16 26 H 0.35 16.94 7.08 -89.70 -0.63 16.31 16 27 H 0.32 13.57 7.33 -89.69 -0.66 12.92 16 28 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.14 5.09 6.66 -2.91 -0.02 5.07 16 30 H 0.41 7.54 9.06 -74.06 -0.67 6.87 16 Total: -1.00 -59.78 266.32 1.19 -58.59 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.75 Total: 33.95 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 2.69 Total: -17.51 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -1.33 Total: -87.33 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -2.21 Total: -26.92 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.76 Total: -4.26 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -59.78 1.19 -58.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.198 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds