Wall clock time and date at job start Mon Mar 30 2020 03:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38751 * 120.03851 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.06996 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.93134 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46912 * 20.00258 * 6 5 4 8 8 N 1.46898 * 109.47173 * 140.00141 * 6 5 4 9 9 C 1.50700 * 109.47104 * 260.00417 * 6 5 4 10 10 H 1.07995 * 120.00189 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99738 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99885 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 119.99829 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47264 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47058 * 119.99989 * 13 11 9 16 16 H 1.48504 * 109.47297 * 240.00037 * 13 11 9 17 17 C 1.38225 * 120.13986 * 359.97438 * 5 4 3 18 18 C 1.38703 * 120.06666 * 0.02562 * 17 5 4 19 19 O 1.35955 * 120.03348 * 179.97438 * 18 17 5 20 20 C 1.38760 * 120.03402 * 179.72724 * 3 2 1 21 21 F 1.35095 * 120.06517 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.96237 * 359.97438 * 4 3 2 26 26 H 1.00897 * 111.00702 * 296.05272 * 8 6 5 27 27 H 1.00904 * 110.99958 * 60.00509 * 8 6 5 28 28 H 0.97008 * 119.99966 * 179.97438 * 12 11 9 29 29 H 1.07999 * 119.96472 * 180.02562 * 17 5 4 30 30 H 0.96698 * 113.99779 * 89.99881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3755 -0.0005 5 6 1.9179 3.6069 0.0000 6 6 1.0950 4.8694 0.0000 7 1 0.0875 4.6463 0.3511 8 7 1.7160 5.8588 0.8907 9 6 1.0278 5.4252 -1.3991 10 1 1.5310 4.9156 -2.2074 11 6 0.3237 6.5845 -1.6473 12 7 -0.2887 7.2054 -0.6629 13 14 0.2410 7.2739 -3.3814 14 1 1.0082 6.3953 -4.3005 15 1 -1.1756 7.3345 -3.8229 16 1 0.8241 8.6395 -3.3996 17 6 3.2981 3.6834 0.0016 18 6 4.0583 2.5233 0.0021 19 8 5.4158 2.5993 0.0032 20 6 3.4319 1.2847 0.0057 21 9 4.1696 0.1530 0.0118 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2129 2.3190 -0.0014 26 1 1.7145 5.5361 1.8467 27 1 2.6516 6.0825 0.5861 28 1 -0.7837 8.0212 -0.8374 29 1 3.7849 4.6474 0.0024 30 1 5.8077 2.6212 0.8869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:24 Heat of formation + Delta-G solvation = -96.823841 kcal Electronic energy + Delta-G solvation = -17211.217821 eV Core-core repulsion = 14114.785904 eV Total energy + Delta-G solvation = -3096.431917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.41416 -39.88389 -38.27878 -36.52702 -33.94575 -31.60544 -29.29999 -29.20103 -27.05006 -25.99741 -23.11365 -22.16188 -20.51461 -18.17483 -17.29672 -16.84775 -16.74805 -16.15778 -15.89538 -14.97470 -14.69614 -14.49794 -14.29029 -14.03905 -13.77224 -13.19380 -12.56604 -12.28547 -11.98296 -11.82705 -11.33929 -11.11819 -10.90328 -10.83904 -10.57574 -10.49800 -9.88251 -9.26876 -8.52231 -8.21216 -7.83755 -7.21719 -5.97181 -4.12799 1.40770 1.61335 3.23492 3.28338 3.37168 3.41511 3.86214 4.35000 4.43498 4.63946 5.09461 5.19529 5.26607 5.27776 5.46240 5.51055 5.69267 5.79605 6.16468 6.27089 6.41408 6.55908 6.78021 6.87593 7.34694 7.47396 7.77506 7.82359 8.04708 8.50337 8.88133 9.03407 9.56704 11.07009 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.007332 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.150839 B = 3818.135547 C = 4268.371002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.106 3.894 4 C -0.188 4.188 5 C -0.027 4.027 6 C 0.254 3.746 7 H 0.051 0.949 8 N -0.808 5.808 9 C -0.533 4.533 10 H 0.056 0.944 11 C 0.085 3.915 12 N -0.845 5.845 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.153 4.153 18 C 0.107 3.893 19 O -0.487 6.487 20 C 0.012 3.988 21 F -0.138 7.138 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.138 0.862 26 H 0.300 0.700 27 H 0.320 0.680 28 H 0.257 0.743 29 H 0.137 0.863 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -9.724 4.129 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.060 3.940 4 C -0.208 4.208 5 C -0.030 4.030 6 C 0.144 3.856 7 H 0.069 0.931 8 N -0.334 5.334 9 C -0.572 4.572 10 H 0.074 0.926 11 C -0.123 4.123 12 N -0.480 5.480 13 Si 0.713 3.287 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.172 4.172 18 C 0.061 3.939 19 O -0.297 6.297 20 C -0.008 4.008 21 F -0.117 7.117 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.155 0.845 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.155 0.845 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.801 -9.290 3.352 10.266 hybrid contribution 0.643 -0.435 -0.331 0.844 sum 3.443 -9.725 3.021 10.750 Atomic orbital electron populations 1.23091 0.78024 1.03656 1.02031 1.86052 1.21676 1.26170 1.89012 1.18850 0.90221 0.85551 0.99420 1.21166 1.00457 0.90760 1.08375 1.21653 0.94071 0.98129 0.89179 1.18292 0.91821 0.81404 0.94062 0.93113 1.59191 1.24491 1.46966 1.02764 1.20835 1.34832 1.10024 0.91509 0.92575 1.24939 0.94612 0.96395 0.96304 1.70107 1.30677 1.16866 1.30309 0.86661 0.77727 0.79110 0.85182 1.19780 1.21029 1.20916 1.21100 0.93790 0.97375 1.04939 1.18131 0.83220 0.90251 1.02279 1.84857 1.15594 1.95986 1.33246 1.17140 0.86239 0.82325 1.15128 1.91418 1.76526 1.48864 1.94858 0.92379 0.92125 0.88381 0.84466 0.89005 0.86752 0.93352 0.84539 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.13 10.36 -19.57 -0.20 -5.33 16 3 C 0.11 1.88 6.69 -39.20 -0.26 1.62 16 4 C -0.19 -3.42 8.66 -39.42 -0.34 -3.76 16 5 C -0.03 -0.54 4.88 -104.65 -0.51 -1.05 16 6 C 0.25 5.87 2.85 -70.02 -0.20 5.67 16 7 H 0.05 1.27 8.00 -51.93 -0.42 0.86 16 8 N -0.81 -17.66 8.36 -6.65 -0.06 -17.71 16 9 C -0.53 -14.01 8.70 -34.44 -0.30 -14.31 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.08 2.28 5.39 -17.82 -0.10 2.18 16 12 N -0.85 -23.63 12.77 55.43 0.71 -22.92 16 13 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C -0.15 -2.82 9.22 -39.41 -0.36 -3.18 16 18 C 0.11 1.87 6.71 -39.20 -0.26 1.61 16 19 O -0.49 -7.46 13.37 -19.60 -0.26 -7.73 16 20 C 0.01 0.22 7.32 -39.18 -0.29 -0.07 16 21 F -0.14 -2.54 16.95 2.25 0.04 -2.51 16 22 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 23 H 0.06 0.70 7.66 -51.93 -0.40 0.31 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.14 2.29 6.27 -52.49 -0.33 1.96 16 26 H 0.30 5.76 9.06 -39.29 -0.36 5.40 16 27 H 0.32 6.64 7.33 -39.29 -0.29 6.35 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.14 2.44 6.65 -52.49 -0.35 2.09 16 30 H 0.39 3.81 9.06 45.56 0.41 4.22 16 LS Contribution 268.78 15.07 4.05 4.05 Total: -1.00 -30.88 268.78 -4.46 -35.34 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.08 Total: 11.00 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.63 Total: -9.99 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.65 Total: -40.63 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.46 Total: -13.06 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.88 -4.46 -35.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.483 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds