Wall clock time and date at job start Mon Mar 30 2020 03:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38751 * 120.03851 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.06996 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.93134 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46912 * 20.00258 * 6 5 4 8 8 N 1.46898 * 109.47173 * 140.00141 * 6 5 4 9 9 C 1.50700 * 109.47104 * 260.00417 * 6 5 4 10 10 H 1.07995 * 120.00189 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99738 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99885 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 119.99829 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47264 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47058 * 119.99989 * 13 11 9 16 16 H 1.48504 * 109.47297 * 240.00037 * 13 11 9 17 17 C 1.38225 * 120.13986 * 359.97438 * 5 4 3 18 18 C 1.38703 * 120.06666 * 0.02562 * 17 5 4 19 19 O 1.35955 * 120.03348 * 179.97438 * 18 17 5 20 20 C 1.38760 * 120.03402 * 179.72724 * 3 2 1 21 21 F 1.35095 * 120.06517 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.96237 * 359.97438 * 4 3 2 26 26 H 1.00897 * 111.00702 * 296.05272 * 8 6 5 27 27 H 1.00904 * 110.99958 * 60.00509 * 8 6 5 28 28 H 0.97008 * 119.99966 * 179.97438 * 12 11 9 29 29 H 1.07999 * 119.96472 * 180.02562 * 17 5 4 30 30 H 0.96698 * 113.99779 * 89.99881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3755 -0.0005 5 6 1.9179 3.6069 0.0000 6 6 1.0950 4.8694 0.0000 7 1 0.0875 4.6463 0.3511 8 7 1.7160 5.8588 0.8907 9 6 1.0278 5.4252 -1.3991 10 1 1.5310 4.9156 -2.2074 11 6 0.3237 6.5845 -1.6473 12 7 -0.2887 7.2054 -0.6629 13 14 0.2410 7.2739 -3.3814 14 1 1.0082 6.3953 -4.3005 15 1 -1.1756 7.3345 -3.8229 16 1 0.8241 8.6395 -3.3996 17 6 3.2981 3.6834 0.0016 18 6 4.0583 2.5233 0.0021 19 8 5.4158 2.5993 0.0032 20 6 3.4319 1.2847 0.0057 21 9 4.1696 0.1530 0.0118 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2129 2.3190 -0.0014 26 1 1.7145 5.5361 1.8467 27 1 2.6516 6.0825 0.5861 28 1 -0.7837 8.0212 -0.8374 29 1 3.7849 4.6474 0.0024 30 1 5.8077 2.6212 0.8869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:24 Heat of formation + Delta-G solvation = -120.697994 kcal Electronic energy + Delta-G solvation = -17212.253082 eV Core-core repulsion = 14114.785904 eV Total energy + Delta-G solvation = -3097.467178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83473 -41.23571 -39.54649 -37.96824 -35.61623 -33.50502 -30.75727 -30.56674 -28.27154 -27.81597 -24.79109 -23.49172 -22.08005 -19.55219 -18.67472 -18.55274 -18.15067 -17.70079 -17.17763 -16.58091 -16.23240 -16.05287 -15.62883 -15.41029 -15.33826 -14.69582 -14.33836 -13.70812 -13.47016 -13.15548 -12.89580 -12.72473 -12.59810 -12.35801 -12.08481 -11.95323 -11.62499 -11.14728 -10.55933 -9.63021 -9.29540 -8.89925 -7.99917 -6.20776 0.01121 0.18903 1.42305 1.46376 1.55723 2.04919 2.38768 2.54011 3.04975 3.24343 3.32114 3.79817 3.84296 4.22630 4.36180 4.37391 4.39656 4.47645 4.69517 4.88410 4.98116 5.09115 5.18774 5.48935 5.68704 5.76509 6.12597 6.20572 6.62969 6.68503 7.08910 7.26495 7.51795 9.03382 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.007332 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.150839 B = 3818.135547 C = 4268.371002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.112 3.888 4 C -0.191 4.191 5 C -0.040 4.040 6 C 0.261 3.739 7 H 0.026 0.974 8 N -0.819 5.819 9 C -0.543 4.543 10 H 0.044 0.956 11 C 0.041 3.959 12 N -0.875 5.875 13 Si 0.944 3.056 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.158 4.158 18 C 0.121 3.879 19 O -0.492 6.492 20 C -0.002 4.002 21 F -0.140 7.140 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.130 0.870 25 H 0.147 0.853 26 H 0.315 0.685 27 H 0.326 0.674 28 H 0.257 0.743 29 H 0.140 0.860 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -10.490 3.957 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.065 3.935 4 C -0.211 4.211 5 C -0.043 4.043 6 C 0.150 3.850 7 H 0.043 0.957 8 N -0.346 5.346 9 C -0.582 4.582 10 H 0.062 0.938 11 C -0.164 4.164 12 N -0.511 5.511 13 Si 0.770 3.230 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.177 4.177 18 C 0.075 3.925 19 O -0.305 6.305 20 C -0.022 4.022 21 F -0.119 7.119 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.148 0.852 25 H 0.165 0.835 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.230 -10.071 3.199 11.049 hybrid contribution 0.544 -0.297 -0.236 0.663 sum 3.774 -10.368 2.964 11.425 Atomic orbital electron populations 1.23443 0.75702 1.06028 1.02513 1.86055 1.24045 1.25299 1.88596 1.18847 0.90234 0.85974 0.98433 1.21196 1.01047 0.90403 1.08418 1.21309 0.94477 0.97332 0.91141 1.17931 0.91395 0.82953 0.92686 0.95651 1.58987 1.24859 1.47156 1.03596 1.21090 1.34246 1.09992 0.92860 0.93750 1.25578 0.94517 0.96849 0.99409 1.70205 1.31633 1.17286 1.31938 0.85760 0.77690 0.78240 0.81324 1.19865 1.20578 1.20760 1.21067 0.93273 0.97917 1.05398 1.18006 0.84025 0.89586 1.00854 1.84790 1.14307 1.95817 1.35590 1.17359 0.86647 0.82532 1.15705 1.91409 1.76559 1.48959 1.94932 0.91431 0.92093 0.85154 0.83524 0.87326 0.86109 0.93421 0.84258 0.72674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.03 10.36 -92.94 -0.96 -10.99 16 3 C 0.11 3.84 6.69 22.52 0.15 3.99 16 4 C -0.19 -6.81 8.66 22.38 0.19 -6.62 16 5 C -0.04 -1.55 4.88 -19.88 -0.10 -1.65 16 6 C 0.26 12.09 2.85 43.42 0.12 12.22 16 7 H 0.03 1.30 8.00 -2.39 -0.02 1.28 16 8 N -0.82 -35.64 8.36 -174.96 -1.46 -37.10 16 9 C -0.54 -28.62 8.70 25.60 0.22 -28.40 16 10 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 11 C 0.04 2.19 5.39 84.66 0.46 2.64 16 12 N -0.88 -49.08 12.77 21.45 0.27 -48.81 16 13 Si 0.94 42.73 29.54 68.60 2.03 44.75 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C -0.16 -5.65 9.22 22.38 0.21 -5.44 16 18 C 0.12 4.05 6.71 22.51 0.15 4.20 16 19 O -0.49 -13.94 13.37 -93.04 -1.24 -15.18 16 20 C 0.00 -0.07 7.32 22.53 0.16 0.09 16 21 F -0.14 -4.92 16.95 44.97 0.76 -4.16 16 22 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 23 H 0.06 1.31 7.66 -2.38 -0.02 1.29 16 24 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.15 4.81 6.27 -2.91 -0.02 4.79 16 26 H 0.32 11.99 9.06 -89.70 -0.81 11.18 16 27 H 0.33 13.40 7.33 -89.69 -0.66 12.75 16 28 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 29 H 0.14 4.84 6.65 -2.91 -0.02 4.82 16 30 H 0.41 7.02 9.06 -74.06 -0.67 6.35 16 Total: -1.00 -64.28 268.78 1.15 -63.13 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.93 Total: 25.85 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 2.68 Total: -17.49 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.19 Total: -85.91 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -2.21 Total: -26.17 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.76 Total: -4.16 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.28 1.15 -63.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.569 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds