Wall clock time and date at job start Mon Mar 30 2020 03:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 117.00115 * 2 1 4 4 C 1.38748 * 120.03466 * 359.72298 * 3 2 1 5 5 C 1.38173 * 120.07054 * 179.71888 * 4 3 2 6 6 C 1.38226 * 120.13732 * 0.55856 * 5 4 3 7 7 C 1.50694 * 119.96687 * 179.69836 * 6 5 4 8 8 H 1.09001 * 109.47267 * 220.01933 * 7 6 5 9 9 N 1.46895 * 109.47229 * 340.01864 * 7 6 5 10 10 C 1.50699 * 109.47066 * 100.01892 * 7 6 5 11 11 H 1.07997 * 119.99756 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99719 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00333 * 0.02562 * 12 10 7 14 14 Si 1.86807 * 119.99893 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47036 * 60.00336 * 14 12 10 16 16 H 1.48496 * 109.47029 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47168 * 300.00344 * 14 12 10 18 18 C 1.38705 * 120.06208 * 359.71684 * 6 5 4 19 19 O 1.35955 * 120.03000 * 180.02562 * 18 6 5 20 20 C 1.38756 * 120.03588 * 179.97438 * 3 2 1 21 21 F 1.35094 * 120.06790 * 359.97438 * 20 3 2 22 22 H 1.09002 * 109.47382 * 300.00220 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00328 * 1 2 3 25 25 H 1.08004 * 119.96220 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.93670 * 180.27340 * 5 4 3 27 27 H 1.00904 * 111.00465 * 60.00234 * 9 7 6 28 28 H 1.00901 * 111.00375 * 183.95362 * 9 7 6 29 29 H 0.97004 * 120.00178 * 179.97438 * 13 12 10 30 30 H 0.96710 * 113.99968 * 269.97961 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3754 -0.0058 5 6 1.9178 3.6070 0.0001 6 6 3.2980 3.6835 0.0001 7 6 3.9773 5.0286 -0.0004 8 1 4.8436 4.9980 -0.6612 9 7 3.0362 6.0523 -0.4741 10 6 4.4243 5.3661 1.3986 11 1 4.2358 4.6754 2.2071 12 6 5.0749 6.5562 1.6462 13 7 5.3050 7.3971 0.6615 14 14 5.6297 6.9743 3.3803 15 1 6.5810 5.9392 3.8587 16 1 6.2990 8.2999 3.3798 17 1 4.4498 7.0163 4.2809 18 6 4.0582 2.5233 0.0001 19 8 5.4156 2.5994 0.0007 20 6 3.4319 1.2848 0.0005 21 9 4.1697 0.1531 0.0016 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3189 -0.0107 26 1 1.3281 4.5117 0.0000 27 1 2.2237 6.1004 0.1224 28 1 3.4865 6.9525 -0.5449 29 1 5.7624 8.2346 0.8358 30 1 5.8087 2.6212 -0.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:27 Heat of formation + Delta-G solvation = -98.848238 kcal Electronic energy + Delta-G solvation = -17340.574100 eV Core-core repulsion = 14244.054399 eV Total energy + Delta-G solvation = -3096.519701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.30599 -39.78136 -38.22002 -35.78205 -34.34122 -31.46895 -29.54267 -28.79954 -27.05835 -25.88615 -23.05430 -22.05376 -20.18573 -18.51178 -17.09525 -16.65432 -16.39603 -16.23253 -15.83188 -15.03344 -14.80940 -14.43872 -14.20162 -13.92360 -13.24380 -12.82180 -12.55461 -12.12229 -11.93473 -11.86425 -11.40757 -11.08814 -10.96241 -10.72824 -10.51390 -10.23576 -9.95435 -9.61214 -8.66772 -8.18074 -7.65134 -7.26485 -6.10339 -4.24437 1.52425 1.76550 3.25826 3.29845 3.30201 3.34977 3.99224 4.36053 4.53864 4.89862 5.04635 5.11626 5.16804 5.25136 5.41181 5.44729 5.73392 5.93313 6.33918 6.39120 6.49584 6.79724 6.88297 7.04002 7.53971 7.59659 7.75054 8.03470 8.19934 8.61792 8.87749 9.02211 9.45579 10.88448 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.032055 B = 0.007068 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.290164 B = 3960.696686 C = 4227.514894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.077 3.923 4 C -0.192 4.192 5 C -0.071 4.071 6 C -0.060 4.060 7 C 0.250 3.750 8 H 0.052 0.948 9 N -0.852 5.852 10 C -0.533 4.533 11 H 0.055 0.945 12 C 0.066 3.934 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.108 3.892 19 O -0.469 6.469 20 C 0.035 3.965 21 F -0.136 7.136 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.138 0.862 27 H 0.311 0.689 28 H 0.358 0.642 29 H 0.266 0.734 30 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 -8.725 -2.825 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.032 3.968 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.061 4.061 7 C 0.141 3.859 8 H 0.070 0.930 9 N -0.383 5.383 10 C -0.572 4.572 11 H 0.073 0.927 12 C -0.136 4.136 13 N -0.536 5.536 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.062 3.938 19 O -0.278 6.278 20 C 0.014 3.986 21 F -0.115 7.115 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.155 0.845 27 H 0.121 0.879 28 H 0.175 0.825 29 H 0.076 0.924 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.993 -9.215 -2.935 12.547 hybrid contribution 0.536 0.613 1.469 1.680 sum -7.457 -8.602 -1.466 11.478 Atomic orbital electron populations 1.23011 0.78653 1.03493 1.01374 1.86063 1.21109 1.26302 1.89579 1.18640 0.90191 0.85284 1.02689 1.21082 0.99648 0.91613 1.08746 1.20799 0.94163 0.96766 0.97193 1.20733 0.93243 0.96551 0.95590 1.17775 0.90229 0.83163 0.94778 0.92990 1.59591 1.10607 1.13298 1.54773 1.21664 1.37932 1.03443 0.94191 0.92701 1.24976 0.94931 0.96238 0.97426 1.69716 1.42417 1.10354 1.31134 0.86552 0.79013 0.77473 0.84385 1.20067 1.21205 1.20297 1.17975 0.84168 0.89316 1.02375 1.84942 1.14642 1.95705 1.32529 1.17326 0.86195 0.82424 1.12615 1.91421 1.76617 1.48853 1.94611 0.92697 0.88568 0.92688 0.85163 0.84458 0.87902 0.82508 0.92424 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -5.00 10.36 -19.59 -0.20 -5.20 16 3 C 0.08 1.36 6.69 -39.20 -0.26 1.09 16 4 C -0.19 -3.07 9.04 -39.42 -0.36 -3.43 16 5 C -0.07 -1.29 9.24 -39.61 -0.37 -1.66 16 6 C -0.06 -1.27 5.04 -104.46 -0.53 -1.79 16 7 C 0.25 6.04 2.60 -70.02 -0.18 5.86 16 8 H 0.05 1.37 7.85 -51.93 -0.41 0.96 16 9 N -0.85 -19.17 8.66 -6.66 -0.06 -19.23 16 10 C -0.53 -14.27 8.70 -34.44 -0.30 -14.57 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.07 1.77 5.38 -17.82 -0.10 1.68 16 13 N -0.90 -24.30 11.54 55.43 0.64 -23.66 16 14 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.11 2.24 6.67 -39.20 -0.26 1.98 16 19 O -0.47 -9.54 12.59 -19.60 -0.25 -9.79 16 20 C 0.03 0.68 7.32 -39.19 -0.29 0.40 16 21 F -0.14 -2.70 16.95 2.25 0.04 -2.66 16 22 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 25 H 0.13 1.62 6.29 -52.48 -0.33 1.29 16 26 H 0.14 2.34 6.24 -52.49 -0.33 2.01 16 27 H 0.31 6.56 7.28 -39.29 -0.29 6.28 16 28 H 0.36 8.73 7.08 -39.29 -0.28 8.45 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.38 5.88 9.07 45.56 0.41 6.30 16 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -30.02 264.77 -4.48 -34.51 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -1.98 Total: 15.05 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.65 Total: -9.15 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.58 Total: -42.89 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.45 Total: -14.99 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.02 -4.48 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.342 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds