Wall clock time and date at job start Mon Mar 30 2020 03:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 117.00115 * 2 1 4 4 C 1.38748 * 120.03466 * 359.72298 * 3 2 1 5 5 C 1.38173 * 120.07054 * 179.71888 * 4 3 2 6 6 C 1.38226 * 120.13732 * 0.55856 * 5 4 3 7 7 C 1.50694 * 119.96687 * 179.69836 * 6 5 4 8 8 H 1.09001 * 109.47267 * 220.01933 * 7 6 5 9 9 N 1.46895 * 109.47229 * 340.01864 * 7 6 5 10 10 C 1.50699 * 109.47066 * 100.01892 * 7 6 5 11 11 H 1.07997 * 119.99756 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99719 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00333 * 0.02562 * 12 10 7 14 14 Si 1.86807 * 119.99893 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47036 * 60.00336 * 14 12 10 16 16 H 1.48496 * 109.47029 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47168 * 300.00344 * 14 12 10 18 18 C 1.38705 * 120.06208 * 359.71684 * 6 5 4 19 19 O 1.35955 * 120.03000 * 180.02562 * 18 6 5 20 20 C 1.38756 * 120.03588 * 179.97438 * 3 2 1 21 21 F 1.35094 * 120.06790 * 359.97438 * 20 3 2 22 22 H 1.09002 * 109.47382 * 300.00220 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00328 * 1 2 3 25 25 H 1.08004 * 119.96220 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.93670 * 180.27340 * 5 4 3 27 27 H 1.00904 * 111.00465 * 60.00234 * 9 7 6 28 28 H 1.00901 * 111.00375 * 183.95362 * 9 7 6 29 29 H 0.97004 * 120.00178 * 179.97438 * 13 12 10 30 30 H 0.96710 * 113.99968 * 269.97961 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3754 -0.0058 5 6 1.9178 3.6070 0.0001 6 6 3.2980 3.6835 0.0001 7 6 3.9773 5.0286 -0.0004 8 1 4.8436 4.9980 -0.6612 9 7 3.0362 6.0523 -0.4741 10 6 4.4243 5.3661 1.3986 11 1 4.2358 4.6754 2.2071 12 6 5.0749 6.5562 1.6462 13 7 5.3050 7.3971 0.6615 14 14 5.6297 6.9743 3.3803 15 1 6.5810 5.9392 3.8587 16 1 6.2990 8.2999 3.3798 17 1 4.4498 7.0163 4.2809 18 6 4.0582 2.5233 0.0001 19 8 5.4156 2.5994 0.0007 20 6 3.4319 1.2848 0.0005 21 9 4.1697 0.1531 0.0016 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3189 -0.0107 26 1 1.3281 4.5117 0.0000 27 1 2.2237 6.1004 0.1224 28 1 3.4865 6.9525 -0.5449 29 1 5.7624 8.2346 0.8358 30 1 5.8087 2.6212 -0.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:27 Heat of formation + Delta-G solvation = -122.150567 kcal Electronic energy + Delta-G solvation = -17341.584564 eV Core-core repulsion = 14244.054399 eV Total energy + Delta-G solvation = -3097.530166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.80697 -41.14463 -39.59746 -37.34262 -36.08545 -33.37441 -30.92996 -30.30776 -28.21399 -27.70296 -24.71822 -23.47652 -21.82594 -19.89488 -18.68876 -18.38803 -17.93026 -17.72625 -17.12042 -16.73572 -16.19462 -16.05310 -15.62430 -15.28779 -14.88945 -14.61797 -14.11654 -13.57903 -13.41711 -13.23502 -12.94058 -12.77198 -12.69026 -12.28358 -12.11796 -11.83363 -11.60570 -11.34870 -10.69127 -9.63805 -9.27832 -9.00217 -8.10324 -6.33809 0.08922 0.31412 1.37356 1.39662 1.47054 2.14908 2.35953 2.59327 3.05856 3.17311 3.46451 3.85489 3.92091 4.27303 4.44864 4.45552 4.51755 4.64082 4.76482 4.96114 5.03332 5.15553 5.37639 5.60304 5.66247 5.79597 6.06013 6.33105 6.65081 6.78619 6.91605 7.12778 7.40486 8.83426 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.032055 B = 0.007068 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.290164 B = 3960.696686 C = 4227.514894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.091 3.909 4 C -0.176 4.176 5 C -0.066 4.066 6 C -0.092 4.092 7 C 0.258 3.742 8 H 0.018 0.982 9 N -0.839 5.839 10 C -0.548 4.548 11 H 0.037 0.963 12 C 0.026 3.974 13 N -0.914 5.914 14 Si 0.952 3.048 15 H -0.283 1.283 16 H -0.278 1.278 17 H -0.271 1.271 18 C 0.097 3.903 19 O -0.491 6.491 20 C 0.011 3.989 21 F -0.143 7.143 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.073 0.927 25 H 0.176 0.824 26 H 0.150 0.850 27 H 0.321 0.679 28 H 0.348 0.652 29 H 0.268 0.732 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 -9.347 -2.453 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.045 3.955 4 C -0.194 4.194 5 C -0.085 4.085 6 C -0.093 4.093 7 C 0.148 3.852 8 H 0.036 0.964 9 N -0.369 5.369 10 C -0.587 4.587 11 H 0.055 0.945 12 C -0.174 4.174 13 N -0.553 5.553 14 Si 0.778 3.222 15 H -0.209 1.209 16 H -0.203 1.203 17 H -0.196 1.196 18 C 0.051 3.949 19 O -0.302 6.302 20 C -0.009 4.009 21 F -0.122 7.122 22 H 0.087 0.913 23 H 0.141 0.859 24 H 0.091 0.909 25 H 0.193 0.807 26 H 0.168 0.832 27 H 0.132 0.868 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.142 -9.851 -2.576 14.372 hybrid contribution 1.110 0.695 1.317 1.858 sum -9.032 -9.156 -1.259 12.922 Atomic orbital electron populations 1.23468 0.75534 1.05944 1.02896 1.86072 1.24266 1.25323 1.88982 1.18744 0.89563 0.86622 1.00606 1.21416 1.01625 0.89832 1.06544 1.20980 0.92937 0.98403 0.96159 1.20550 0.94687 0.95096 0.98967 1.17477 0.89900 0.85230 0.92621 0.96369 1.59534 1.10381 1.12272 1.54682 1.21860 1.38428 1.03287 0.95148 0.94462 1.25606 0.95038 0.96234 1.00515 1.69800 1.42637 1.10517 1.32382 0.85712 0.78544 0.77158 0.80785 1.20857 1.20336 1.19622 1.18098 0.84063 0.89882 1.02878 1.84863 1.15218 1.95824 1.34289 1.17476 0.87375 0.81832 1.14255 1.91391 1.77013 1.48973 1.94829 0.91272 0.85948 0.90879 0.80726 0.83209 0.86848 0.83751 0.92293 0.74209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -9.49 10.36 -93.02 -0.96 -10.45 16 3 C 0.09 2.98 6.69 22.52 0.15 3.13 16 4 C -0.18 -5.04 9.04 22.38 0.20 -4.83 16 5 C -0.07 -2.30 9.24 22.25 0.21 -2.10 16 6 C -0.09 -3.89 5.04 -19.76 -0.10 -3.99 16 7 C 0.26 12.69 2.60 43.42 0.11 12.80 16 8 H 0.02 1.01 7.85 -2.39 -0.02 0.99 16 9 N -0.84 -37.79 8.66 -174.97 -1.52 -39.30 16 10 C -0.55 -29.82 8.70 25.60 0.22 -29.60 16 11 H 0.04 2.11 7.74 -2.91 -0.02 2.09 16 12 C 0.03 1.41 5.38 84.65 0.46 1.87 16 13 N -0.91 -49.89 11.54 21.45 0.25 -49.64 16 14 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.10 4.08 6.67 22.51 0.15 4.23 16 19 O -0.49 -20.72 12.59 -93.05 -1.17 -21.89 16 20 C 0.01 0.43 7.32 22.53 0.16 0.59 16 21 F -0.14 -5.69 16.95 44.97 0.76 -4.92 16 22 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 23 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 0.96 7.65 -2.38 -0.02 0.94 16 25 H 0.18 3.40 6.29 -2.91 -0.02 3.38 16 26 H 0.15 4.74 6.24 -2.91 -0.02 4.72 16 27 H 0.32 13.28 7.28 -89.69 -0.65 12.63 16 28 H 0.35 17.07 7.08 -89.69 -0.63 16.43 16 29 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.40 13.00 9.07 -74.05 -0.67 12.33 16 Total: -1.00 -64.87 264.77 1.32 -63.55 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.74 Total: 33.69 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 2.68 Total: -16.54 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -1.27 Total: -88.95 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -2.14 Total: -32.35 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.76 Total: -4.92 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.87 1.32 -63.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.598 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds