Wall clock time and date at job start Mon Mar 30 2020 03:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 116.99641 * 2 1 4 4 C 1.38678 * 120.01467 * 180.02562 * 3 2 1 5 5 C 1.38628 * 119.93990 * 180.02562 * 4 3 2 6 6 O 1.35896 * 120.01354 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.97260 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.98600 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47193 * 345.00357 * 8 7 5 10 10 N 1.46893 * 109.47297 * 225.00152 * 8 7 5 11 11 C 1.50699 * 109.47089 * 105.00100 * 8 7 5 12 12 H 1.07998 * 119.99994 * 5.59035 * 11 8 7 13 13 C 1.37878 * 120.00350 * 185.59611 * 11 8 7 14 14 N 1.31515 * 120.00186 * 196.09965 * 13 11 8 15 15 Si 1.86808 * 119.99532 * 15.81802 * 13 11 8 16 16 H 1.48499 * 109.46674 * 180.27484 * 15 13 11 17 17 H 1.48497 * 109.47255 * 300.27951 * 15 13 11 18 18 H 1.48502 * 109.46944 * 60.28083 * 15 13 11 19 19 C 1.38379 * 120.02770 * 0.27358 * 7 5 4 20 20 F 1.35104 * 119.96833 * 179.70229 * 19 7 5 21 21 C 1.38424 * 120.05996 * 359.46029 * 19 7 5 22 22 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47139 * 299.99911 * 1 2 3 24 24 H 1.09000 * 109.47268 * 59.99872 * 1 2 3 25 25 H 1.08003 * 120.02712 * 0.03633 * 4 3 2 26 26 H 0.96699 * 114.00444 * 270.02195 * 6 5 4 27 27 H 1.00895 * 111.00210 * 172.43105 * 10 8 7 28 28 H 1.00903 * 110.99781 * 296.38362 * 10 8 7 29 29 H 0.96991 * 119.99528 * 354.34140 * 14 13 11 30 30 H 1.08006 * 119.98719 * 180.27487 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4308 1.2839 -0.0005 5 6 4.0584 2.5199 0.0000 6 8 5.4154 2.5932 0.0000 7 6 3.3006 3.6822 0.0005 8 6 3.9826 5.0260 0.0005 9 1 5.0324 4.9007 0.2660 10 7 3.3314 5.9057 0.9803 11 6 3.8814 5.6407 -1.3717 12 1 3.2978 5.1546 -2.1394 13 6 4.5341 6.8236 -1.6471 14 7 4.2062 7.5231 -2.7114 15 14 5.8785 7.4365 -0.5041 16 1 6.4137 8.7240 -1.0152 17 1 5.3180 7.6384 0.8561 18 1 6.9728 6.4343 -0.4449 19 6 1.9188 3.6079 0.0063 20 9 1.1821 4.7404 0.0129 21 6 1.2907 2.3744 0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.0197 0.3786 -0.0015 26 1 5.8083 2.6137 0.8834 27 1 3.8439 6.7679 1.0890 28 1 2.3721 6.0851 0.7237 29 1 3.5644 7.1683 -3.3462 30 1 0.2121 2.3178 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:44 Heat of formation + Delta-G solvation = -96.273470 kcal Electronic energy + Delta-G solvation = -17528.792977 eV Core-core repulsion = 14432.384926 eV Total energy + Delta-G solvation = -3096.408051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.36670 -39.99450 -38.32727 -35.63377 -34.54632 -31.78873 -29.92072 -29.01914 -27.21367 -25.54214 -22.76548 -22.18882 -20.13960 -18.71277 -17.87762 -16.93131 -16.68024 -15.84790 -15.77621 -15.19280 -14.95302 -14.52360 -14.13571 -14.02439 -13.52831 -13.04564 -12.80552 -12.43378 -12.02283 -11.89612 -11.84077 -11.32648 -10.90299 -10.49054 -10.38963 -10.10290 -9.94952 -9.27997 -8.46008 -8.36505 -7.86737 -7.48718 -6.46559 -4.19645 1.41669 1.68902 3.23812 3.27442 3.37706 3.53502 3.84972 4.37975 4.51617 4.74918 5.06223 5.11153 5.14324 5.18252 5.34590 5.40306 5.47636 5.67538 6.14844 6.28281 6.35438 6.44728 6.60885 6.90503 7.18311 7.46672 7.79646 8.01217 8.23074 8.38752 8.56042 8.84150 9.51435 10.83851 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.007875 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.674824 B = 3554.748573 C = 3921.082648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.144 3.856 4 C -0.190 4.190 5 C 0.163 3.837 6 O -0.481 6.481 7 C -0.111 4.111 8 C 0.220 3.780 9 H 0.052 0.948 10 N -0.867 5.867 11 C -0.618 4.618 12 H 0.054 0.946 13 C 0.030 3.970 14 N -0.899 5.899 15 Si 1.049 2.951 16 H -0.284 1.284 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.162 3.838 20 F -0.123 7.123 21 C -0.256 4.256 22 H 0.098 0.902 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.136 0.864 26 H 0.388 0.612 27 H 0.329 0.671 28 H 0.335 0.665 29 H 0.268 0.732 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -11.830 7.955 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.209 4.209 5 C 0.117 3.883 6 O -0.291 6.291 7 C -0.113 4.113 8 C 0.110 3.890 9 H 0.069 0.931 10 N -0.402 5.402 11 C -0.658 4.658 12 H 0.072 0.928 13 C -0.176 4.176 14 N -0.533 5.533 15 Si 0.878 3.122 16 H -0.209 1.209 17 H -0.202 1.202 18 H -0.205 1.205 19 C 0.142 3.858 20 F -0.101 7.101 21 C -0.276 4.276 22 H 0.116 0.884 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.244 0.756 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.257 -11.283 8.125 14.280 hybrid contribution -1.532 -0.356 -0.835 1.781 sum -4.789 -11.639 7.289 14.544 Atomic orbital electron populations 1.23038 0.78605 1.03599 1.01556 1.86039 1.21216 1.26562 1.89133 1.18165 0.91378 0.83429 0.97179 1.20464 0.91586 0.98168 1.10715 1.17525 0.83195 0.89952 0.97579 1.84864 1.15345 1.95931 1.32962 1.20468 0.91819 0.97826 1.01205 1.18078 0.93407 0.85531 0.91951 0.93075 1.59884 1.07907 1.20549 1.51851 1.22548 1.35140 1.10519 0.97599 0.92777 1.25850 0.98670 0.93217 0.99846 1.70841 1.33288 1.36098 1.13043 0.83945 0.76476 0.76633 0.75183 1.20946 1.20159 1.20531 1.16861 0.88424 0.81200 0.99323 1.91374 1.76457 1.49035 1.93282 1.21033 1.00578 0.91276 1.14705 0.88401 0.92627 0.92624 0.84643 0.75575 0.85594 0.85044 0.92136 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.46 10.49 -19.41 -0.20 -4.67 16 3 C 0.14 2.35 6.68 -39.24 -0.26 2.09 16 4 C -0.19 -3.20 9.92 -39.27 -0.39 -3.59 16 5 C 0.16 3.13 6.67 -39.25 -0.26 2.87 16 6 O -0.48 -8.54 12.33 -19.41 -0.24 -8.78 16 7 C -0.11 -2.43 4.91 -104.38 -0.51 -2.94 16 8 C 0.22 5.34 2.29 -70.02 -0.16 5.18 16 9 H 0.05 1.24 5.82 -51.93 -0.30 0.93 16 10 N -0.87 -19.85 9.03 -6.65 -0.06 -19.91 16 11 C -0.62 -17.64 8.92 -34.44 -0.31 -17.95 16 12 H 0.05 1.71 7.99 -52.49 -0.42 1.29 16 13 C 0.03 0.87 5.43 -17.82 -0.10 0.77 16 14 N -0.90 -27.64 13.70 55.43 0.76 -26.88 16 15 Si 1.05 24.82 26.51 -169.99 -4.51 20.31 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.27 -5.88 5.54 56.52 0.31 -5.57 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.16 3.33 7.01 -39.46 -0.28 3.06 16 20 F -0.12 -2.65 14.35 2.25 0.03 -2.62 16 21 C -0.26 -4.38 9.01 -39.34 -0.35 -4.74 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 26 H 0.39 4.75 9.06 45.56 0.41 5.17 16 27 H 0.33 7.50 5.61 -39.29 -0.22 7.28 16 28 H 0.33 7.75 6.23 -39.29 -0.24 7.51 16 29 H 0.27 8.32 8.73 -40.82 -0.36 7.96 16 30 H 0.13 1.91 6.29 -52.48 -0.33 1.58 16 LS Contribution 258.08 15.07 3.89 3.89 Total: -1.00 -32.81 258.08 -3.94 -36.75 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -1.98 Total: 15.89 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.63 Total: -13.99 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.70 Total: -46.79 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.44 Total: -13.44 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.03 Total: -2.62 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.51 Total: 20.31 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.81 -3.94 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.522 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds