Wall clock time and date at job start Mon Mar 30 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 116.99641 * 2 1 4 4 C 1.38678 * 120.01467 * 180.02562 * 3 2 1 5 5 C 1.38628 * 119.93990 * 180.02562 * 4 3 2 6 6 O 1.35896 * 120.01354 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.97260 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.98600 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47193 * 345.00357 * 8 7 5 10 10 N 1.46893 * 109.47297 * 225.00152 * 8 7 5 11 11 C 1.50699 * 109.47089 * 105.00100 * 8 7 5 12 12 H 1.07998 * 119.99994 * 5.59035 * 11 8 7 13 13 C 1.37878 * 120.00350 * 185.59611 * 11 8 7 14 14 N 1.31515 * 120.00186 * 196.09965 * 13 11 8 15 15 Si 1.86808 * 119.99532 * 15.81802 * 13 11 8 16 16 H 1.48499 * 109.46674 * 180.27484 * 15 13 11 17 17 H 1.48497 * 109.47255 * 300.27951 * 15 13 11 18 18 H 1.48502 * 109.46944 * 60.28083 * 15 13 11 19 19 C 1.38379 * 120.02770 * 0.27358 * 7 5 4 20 20 F 1.35104 * 119.96833 * 179.70229 * 19 7 5 21 21 C 1.38424 * 120.05996 * 359.46029 * 19 7 5 22 22 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47139 * 299.99911 * 1 2 3 24 24 H 1.09000 * 109.47268 * 59.99872 * 1 2 3 25 25 H 1.08003 * 120.02712 * 0.03633 * 4 3 2 26 26 H 0.96699 * 114.00444 * 270.02195 * 6 5 4 27 27 H 1.00895 * 111.00210 * 172.43105 * 10 8 7 28 28 H 1.00903 * 110.99781 * 296.38362 * 10 8 7 29 29 H 0.96991 * 119.99528 * 354.34140 * 14 13 11 30 30 H 1.08006 * 119.98719 * 180.27487 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4308 1.2839 -0.0005 5 6 4.0584 2.5199 0.0000 6 8 5.4154 2.5932 0.0000 7 6 3.3006 3.6822 0.0005 8 6 3.9826 5.0260 0.0005 9 1 5.0324 4.9007 0.2660 10 7 3.3314 5.9057 0.9803 11 6 3.8814 5.6407 -1.3717 12 1 3.2978 5.1546 -2.1394 13 6 4.5341 6.8236 -1.6471 14 7 4.2062 7.5231 -2.7114 15 14 5.8785 7.4365 -0.5041 16 1 6.4137 8.7240 -1.0152 17 1 5.3180 7.6384 0.8561 18 1 6.9728 6.4343 -0.4449 19 6 1.9188 3.6079 0.0063 20 9 1.1821 4.7404 0.0129 21 6 1.2907 2.3744 0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.0197 0.3786 -0.0015 26 1 5.8083 2.6137 0.8834 27 1 3.8439 6.7679 1.0890 28 1 2.3721 6.0851 0.7237 29 1 3.5644 7.1683 -3.3462 30 1 0.2121 2.3178 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:43 Heat of formation + Delta-G solvation = -123.611926 kcal Electronic energy + Delta-G solvation = -17529.978461 eV Core-core repulsion = 14432.384926 eV Total energy + Delta-G solvation = -3097.593535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.96897 -41.29446 -39.61289 -37.15391 -36.26568 -33.89156 -31.27102 -30.50353 -28.28185 -27.47578 -24.41468 -23.57708 -21.86841 -20.04745 -19.93543 -18.45216 -17.96644 -17.35610 -16.98752 -16.69635 -16.37647 -16.01919 -15.66707 -15.42129 -15.23974 -14.89550 -14.61721 -13.92649 -13.76297 -13.32139 -13.08554 -12.67112 -12.40686 -12.07618 -11.89079 -11.68169 -11.65742 -11.30238 -10.65071 -9.76670 -9.57932 -9.25678 -8.65040 -6.50220 0.02767 0.24923 1.39299 1.49734 1.68528 2.14240 2.40357 2.44689 2.98706 3.16225 3.40396 3.86806 3.89457 3.94094 4.24416 4.35828 4.38279 4.40990 4.71918 4.83973 4.95562 5.03094 5.05600 5.41101 5.55169 5.73624 5.89442 6.27582 6.34104 6.49702 6.75572 6.83122 7.30511 8.52171 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.007875 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.674824 B = 3554.748573 C = 3921.082648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.158 3.842 4 C -0.187 4.187 5 C 0.164 3.836 6 O -0.493 6.493 7 C -0.156 4.156 8 C 0.226 3.774 9 H 0.057 0.943 10 N -0.853 5.853 11 C -0.620 4.620 12 H 0.005 0.995 13 C -0.021 4.021 14 N -0.930 5.930 15 Si 1.091 2.909 16 H -0.287 1.287 17 H -0.239 1.239 18 H -0.261 1.261 19 C 0.138 3.862 20 F -0.138 7.138 21 C -0.252 4.252 22 H 0.130 0.870 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.162 0.838 26 H 0.412 0.588 27 H 0.330 0.670 28 H 0.332 0.668 29 H 0.249 0.751 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -13.759 9.817 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.206 4.206 5 C 0.119 3.881 6 O -0.306 6.306 7 C -0.158 4.158 8 C 0.116 3.884 9 H 0.074 0.926 10 N -0.387 5.387 11 C -0.660 4.660 12 H 0.023 0.977 13 C -0.220 4.220 14 N -0.566 5.566 15 Si 0.911 3.089 16 H -0.213 1.213 17 H -0.163 1.163 18 H -0.186 1.186 19 C 0.118 3.882 20 F -0.117 7.117 21 C -0.271 4.271 22 H 0.148 0.852 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.179 0.821 26 H 0.271 0.729 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.058 0.942 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.130 -13.249 10.013 16.900 hybrid contribution -1.703 0.049 -1.456 2.241 sum -4.832 -13.200 8.557 16.457 Atomic orbital electron populations 1.23444 0.76131 1.06105 1.02333 1.86064 1.23680 1.24977 1.88384 1.18259 0.91441 0.84048 0.95026 1.20688 0.92193 0.98115 1.09588 1.17607 0.83593 0.89949 0.96995 1.84792 1.14744 1.95894 1.35213 1.20463 0.92763 0.97519 1.05061 1.17888 0.94241 0.86984 0.89275 0.92564 1.59857 1.07633 1.20387 1.50839 1.22733 1.33774 1.10661 0.98809 0.97690 1.27424 1.00307 0.93706 1.00559 1.70985 1.34234 1.37089 1.14253 0.83469 0.74137 0.76334 0.74959 1.21337 1.16322 1.18575 1.17191 0.88366 0.81967 1.00679 1.91324 1.76675 1.50038 1.93624 1.21236 1.02062 0.90113 1.13701 0.85191 0.91433 0.92221 0.82062 0.72860 0.85575 0.85331 0.94169 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.82 10.49 -92.37 -0.97 -8.79 16 3 C 0.16 4.76 6.68 22.49 0.15 4.91 16 4 C -0.19 -5.82 9.92 22.47 0.22 -5.60 16 5 C 0.16 6.08 6.67 22.49 0.15 6.23 16 6 O -0.49 -16.62 12.33 -92.38 -1.14 -17.76 16 7 C -0.16 -6.79 4.91 -19.71 -0.10 -6.89 16 8 C 0.23 10.96 2.29 43.42 0.10 11.06 16 9 H 0.06 2.65 5.82 -2.38 -0.01 2.63 16 10 N -0.85 -38.51 9.03 -174.96 -1.58 -40.09 16 11 C -0.62 -36.45 8.92 25.60 0.23 -36.22 16 12 H 0.00 0.31 7.99 -2.91 -0.02 0.29 16 13 C -0.02 -1.26 5.43 84.65 0.46 -0.80 16 14 N -0.93 -59.24 13.70 21.45 0.29 -58.95 16 15 Si 1.09 49.40 26.51 68.60 1.82 51.22 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.24 -9.35 5.54 99.48 0.55 -8.80 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 C 0.14 5.66 7.01 22.35 0.16 5.81 16 20 F -0.14 -6.06 14.35 44.97 0.65 -5.41 16 21 C -0.25 -8.16 9.01 22.43 0.20 -7.96 16 22 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 24 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 25 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 26 H 0.41 9.11 9.06 -74.06 -0.67 8.44 16 27 H 0.33 14.49 5.61 -89.70 -0.50 13.99 16 28 H 0.33 15.48 6.23 -89.69 -0.56 14.92 16 29 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 30 H 0.16 4.19 6.29 -2.91 -0.02 4.17 16 Total: -1.00 -73.30 258.08 1.04 -72.26 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.71 Total: 35.64 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 2.69 Total: -28.12 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -1.29 Total: -99.04 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -2.11 Total: -26.55 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.65 Total: -5.41 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.82 Total: 51.22 kcal Total: -73.30 1.04 -72.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.352 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds