Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35893 * 116.99988 * 2 1 4 4 C 1.38667 * 120.01875 * 359.97036 * 3 2 1 5 5 C 1.38629 * 119.94247 * 180.02562 * 4 3 2 6 6 O 1.35899 * 120.01346 * 180.02562 * 5 4 3 7 7 C 1.38742 * 119.97042 * 0.02562 * 5 4 3 8 8 C 1.38383 * 120.02835 * 359.72054 * 7 5 4 9 9 F 1.35107 * 119.96916 * 180.29524 * 8 7 5 10 10 C 1.38422 * 120.05887 * 0.55376 * 8 7 5 11 11 C 1.50700 * 119.98510 * 179.72390 * 10 8 7 12 12 H 1.09001 * 109.47087 * 194.72753 * 11 10 8 13 13 N 1.46905 * 109.47121 * 314.72556 * 11 10 8 14 14 C 1.50698 * 109.47079 * 74.72270 * 11 10 8 15 15 H 1.08003 * 120.00217 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00029 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99980 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00103 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47036 * 60.00317 * 18 16 14 20 20 H 1.48500 * 109.46831 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47009 * 300.00091 * 18 16 14 22 22 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47171 * 300.01044 * 1 2 3 24 24 H 1.09001 * 109.47082 * 60.00273 * 1 2 3 25 25 H 1.08004 * 120.02794 * 0.05069 * 4 3 2 26 26 H 0.96700 * 113.99525 * 90.00497 * 6 5 4 27 27 H 1.08001 * 119.98851 * 179.97438 * 7 5 4 28 28 H 1.00901 * 110.99869 * 60.00289 * 13 11 10 29 29 H 1.00896 * 110.99543 * 183.95412 * 13 11 10 30 30 H 0.96999 * 120.00171 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3740 -0.0006 5 6 1.9222 3.6084 -0.0012 6 8 1.1838 4.7493 -0.0012 7 6 3.3078 3.6784 -0.0016 8 6 4.0599 2.5168 0.0043 9 9 5.4092 2.5865 0.0099 10 6 3.4312 1.2837 -0.0009 11 6 4.2519 0.0198 -0.0007 12 1 3.6172 -0.8256 -0.2663 13 7 5.3397 0.1422 -0.9804 14 6 4.8343 -0.2008 1.3716 15 1 4.6302 0.5036 2.1645 16 6 5.6269 -1.3024 1.6152 17 7 5.8750 -2.1604 0.6499 18 14 6.3482 -1.5761 3.3165 19 1 5.2483 -1.6996 4.3065 20 1 7.1571 -2.8215 3.3165 21 1 7.2132 -0.4247 3.6785 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2126 2.3184 -0.0003 26 1 0.9705 5.0797 0.8822 27 1 3.7997 4.6399 -0.0024 28 1 5.9427 0.9194 -0.7560 29 1 5.8657 -0.7164 -1.0457 30 1 6.4329 -2.9351 0.8212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = -98.443934 kcal Electronic energy + Delta-G solvation = -17576.369140 eV Core-core repulsion = 14479.866971 eV Total energy + Delta-G solvation = -3096.502169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.25611 -39.89373 -38.01673 -35.96939 -34.20132 -31.36541 -29.52623 -28.96685 -26.88815 -25.73047 -22.96991 -21.93536 -20.41906 -18.72569 -17.00321 -16.63017 -16.37955 -15.65745 -15.43174 -15.18407 -14.83165 -14.54768 -14.38926 -13.63260 -13.30183 -13.00930 -12.77235 -12.06674 -11.87898 -11.70408 -11.18045 -11.04704 -10.77108 -10.64923 -10.54677 -10.42018 -9.99304 -9.59786 -8.57488 -8.09765 -7.72840 -7.09569 -6.02712 -4.18957 1.57421 1.68650 3.27267 3.31660 3.34699 3.57199 3.91988 4.32062 4.38184 4.99566 5.18138 5.25854 5.31818 5.36769 5.42320 5.55468 5.67692 5.96540 6.07779 6.48381 6.57508 6.67505 6.88846 7.14966 7.62163 7.72097 7.78643 7.89952 8.13226 8.72837 9.00613 9.22354 9.51606 10.94998 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.008729 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.311860 B = 3207.018270 C = 3673.927247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C 0.164 3.836 4 C -0.248 4.248 5 C 0.141 3.859 6 O -0.497 6.497 7 C -0.221 4.221 8 C 0.158 3.842 9 F -0.121 7.121 10 C -0.097 4.097 11 C 0.249 3.751 12 H 0.061 0.939 13 N -0.859 5.859 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.132 0.868 26 H 0.387 0.613 27 H 0.133 0.867 28 H 0.319 0.681 29 H 0.356 0.644 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 8.064 0.301 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.117 3.883 4 C -0.268 4.268 5 C 0.096 3.904 6 O -0.307 6.307 7 C -0.241 4.241 8 C 0.138 3.862 9 F -0.099 7.099 10 C -0.099 4.099 11 C 0.139 3.861 12 H 0.079 0.921 13 N -0.393 5.393 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.135 4.135 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.242 0.758 27 H 0.151 0.849 28 H 0.132 0.868 29 H 0.172 0.828 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.345 7.739 -0.900 12.167 hybrid contribution 0.914 -0.104 2.358 2.531 sum -8.431 7.635 1.458 11.467 Atomic orbital electron populations 1.23039 0.79345 1.03700 1.00790 1.86259 1.20306 1.25902 1.88058 1.18231 0.91060 0.83860 0.95143 1.21303 1.00302 0.91681 1.13480 1.17517 0.88313 0.84862 0.99707 1.84794 1.72693 1.39916 1.33300 1.21099 0.93630 0.98096 1.11282 1.16816 0.77128 0.92391 0.99879 1.91377 1.28620 1.96574 1.93329 1.19970 0.91463 0.96963 1.01520 1.17807 0.89658 0.88072 0.90565 0.92149 1.59594 1.17480 1.10774 1.51415 1.21719 1.30744 1.08778 0.96678 0.92957 1.24978 0.96015 0.95259 0.97246 1.69740 1.38210 1.13185 1.32030 0.86577 0.79120 0.77499 0.84351 1.20207 1.21135 1.20206 0.88379 0.93011 0.92999 0.85038 0.75788 0.84912 0.86784 0.82803 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.68 9.33 -19.40 -0.18 -5.86 16 3 C 0.16 3.27 6.66 -39.25 -0.26 3.01 16 4 C -0.25 -4.10 8.97 -39.28 -0.35 -4.45 16 5 C 0.14 2.26 6.70 -39.25 -0.26 2.00 16 6 O -0.50 -6.51 13.50 -19.42 -0.26 -6.77 16 7 C -0.22 -3.88 9.96 -39.34 -0.39 -4.27 16 8 C 0.16 3.31 7.00 -39.46 -0.28 3.04 16 9 F -0.12 -2.63 14.31 2.25 0.03 -2.60 16 10 C -0.10 -2.21 4.91 -104.38 -0.51 -2.72 16 11 C 0.25 6.53 2.76 -70.01 -0.19 6.34 16 12 H 0.06 1.74 7.14 -51.93 -0.37 1.37 16 13 N -0.86 -22.03 9.07 -6.65 -0.06 -22.09 16 14 C -0.54 -15.04 8.61 -34.44 -0.30 -15.34 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.07 1.87 5.38 -17.82 -0.10 1.77 16 17 N -0.89 -25.25 11.54 55.43 0.64 -24.61 16 18 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 24 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 25 H 0.13 1.78 6.29 -52.48 -0.33 1.45 16 26 H 0.39 3.05 9.06 45.56 0.41 3.46 16 27 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.32 7.96 6.14 -39.29 -0.24 7.72 16 29 H 0.36 9.59 7.08 -39.29 -0.28 9.31 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 262.64 15.07 3.96 3.96 Total: -1.00 -31.14 262.64 -4.54 -35.68 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -1.99 Total: 15.16 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.65 Total: -9.29 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.58 Total: -46.69 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.44 Total: -12.63 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.14 -4.54 -35.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.769 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds