Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35893 * 116.99988 * 2 1 4 4 C 1.38667 * 120.01875 * 359.97036 * 3 2 1 5 5 C 1.38629 * 119.94247 * 180.02562 * 4 3 2 6 6 O 1.35899 * 120.01346 * 180.02562 * 5 4 3 7 7 C 1.38742 * 119.97042 * 0.02562 * 5 4 3 8 8 C 1.38383 * 120.02835 * 359.72054 * 7 5 4 9 9 F 1.35107 * 119.96916 * 180.29524 * 8 7 5 10 10 C 1.38422 * 120.05887 * 0.55376 * 8 7 5 11 11 C 1.50700 * 119.98510 * 179.72390 * 10 8 7 12 12 H 1.09001 * 109.47087 * 194.72753 * 11 10 8 13 13 N 1.46905 * 109.47121 * 314.72556 * 11 10 8 14 14 C 1.50698 * 109.47079 * 74.72270 * 11 10 8 15 15 H 1.08003 * 120.00217 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00029 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99980 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00103 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47036 * 60.00317 * 18 16 14 20 20 H 1.48500 * 109.46831 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47009 * 300.00091 * 18 16 14 22 22 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47171 * 300.01044 * 1 2 3 24 24 H 1.09001 * 109.47082 * 60.00273 * 1 2 3 25 25 H 1.08004 * 120.02794 * 0.05069 * 4 3 2 26 26 H 0.96700 * 113.99525 * 90.00497 * 6 5 4 27 27 H 1.08001 * 119.98851 * 179.97438 * 7 5 4 28 28 H 1.00901 * 110.99869 * 60.00289 * 13 11 10 29 29 H 1.00896 * 110.99543 * 183.95412 * 13 11 10 30 30 H 0.96999 * 120.00171 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3740 -0.0006 5 6 1.9222 3.6084 -0.0012 6 8 1.1838 4.7493 -0.0012 7 6 3.3078 3.6784 -0.0016 8 6 4.0599 2.5168 0.0043 9 9 5.4092 2.5865 0.0099 10 6 3.4312 1.2837 -0.0009 11 6 4.2519 0.0198 -0.0007 12 1 3.6172 -0.8256 -0.2663 13 7 5.3397 0.1422 -0.9804 14 6 4.8343 -0.2008 1.3716 15 1 4.6302 0.5036 2.1645 16 6 5.6269 -1.3024 1.6152 17 7 5.8750 -2.1604 0.6499 18 14 6.3482 -1.5761 3.3165 19 1 5.2483 -1.6996 4.3065 20 1 7.1571 -2.8215 3.3165 21 1 7.2132 -0.4247 3.6785 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2126 2.3184 -0.0003 26 1 0.9705 5.0797 0.8822 27 1 3.7997 4.6399 -0.0024 28 1 5.9427 0.9194 -0.7560 29 1 5.8657 -0.7164 -1.0457 30 1 6.4329 -2.9351 0.8212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -123.293948 kcal Electronic energy + Delta-G solvation = -17577.446718 eV Core-core repulsion = 14479.866971 eV Total energy + Delta-G solvation = -3097.579747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86996 -41.26202 -39.24114 -37.50424 -35.95511 -33.34970 -30.90792 -30.52280 -28.15729 -27.68832 -24.63974 -23.32493 -22.13000 -19.98969 -18.79712 -18.16908 -17.86873 -17.20291 -16.85662 -16.74790 -16.33654 -16.21427 -15.69718 -15.34100 -14.86571 -14.71097 -14.31943 -13.86867 -13.42767 -13.03160 -12.89642 -12.73977 -12.54969 -12.35566 -11.96858 -11.79841 -11.67886 -11.45299 -10.68000 -9.54173 -9.32620 -9.05157 -8.10880 -6.36862 0.15524 0.28720 1.36169 1.37622 1.45926 2.30604 2.34811 2.55383 3.05253 3.09830 3.61772 3.97284 4.06002 4.06749 4.33098 4.43773 4.49324 4.71550 4.73977 4.82664 5.06049 5.17825 5.23441 5.60099 5.66415 5.75600 6.06592 6.45680 6.62390 6.84081 6.91116 7.11555 7.37589 8.83908 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.008729 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.311860 B = 3207.018270 C = 3673.927247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.156 3.844 4 C -0.237 4.237 5 C 0.166 3.834 6 O -0.492 6.492 7 C -0.220 4.220 8 C 0.139 3.861 9 F -0.135 7.135 10 C -0.145 4.145 11 C 0.255 3.745 12 H 0.022 0.978 13 N -0.854 5.854 14 C -0.555 4.555 15 H 0.042 0.958 16 C 0.020 3.980 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.273 1.273 22 H 0.113 0.887 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.167 0.833 26 H 0.416 0.584 27 H 0.157 0.843 28 H 0.322 0.678 29 H 0.344 0.656 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 9.799 1.150 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.109 3.891 4 C -0.256 4.256 5 C 0.121 3.879 6 O -0.306 6.306 7 C -0.239 4.239 8 C 0.119 3.881 9 F -0.113 7.113 10 C -0.147 4.147 11 C 0.145 3.855 12 H 0.040 0.960 13 N -0.386 5.386 14 C -0.595 4.595 15 H 0.061 0.939 16 C -0.180 4.180 17 N -0.556 5.556 18 Si 0.785 3.215 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.198 1.198 22 H 0.132 0.868 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.185 0.815 26 H 0.276 0.724 27 H 0.175 0.825 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.053 9.502 -0.034 14.576 hybrid contribution 1.276 -0.566 2.059 2.488 sum -9.777 8.936 2.025 13.399 Atomic orbital electron populations 1.23422 0.76234 1.05546 1.02647 1.86213 1.23668 1.26359 1.88041 1.18354 0.90438 0.85246 0.95040 1.21573 1.01796 0.90459 1.11750 1.17506 0.87898 0.85726 0.96791 1.84738 1.71775 1.38347 1.35723 1.21309 0.94320 0.97705 1.10581 1.17072 0.76806 0.93127 1.01081 1.91323 1.29739 1.96631 1.93638 1.19818 0.92843 0.96057 1.05963 1.17509 0.89330 0.89074 0.89625 0.96024 1.59584 1.17328 1.10158 1.51571 1.21936 1.31271 1.08866 0.97397 0.93921 1.25769 0.96332 0.94972 1.00939 1.69849 1.38570 1.13466 1.33717 0.85586 0.78415 0.77577 0.79911 1.19699 1.20314 1.19832 0.86825 0.90977 0.91059 0.81518 0.72391 0.82509 0.86467 0.84120 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -12.80 9.33 -92.34 -0.86 -13.67 16 3 C 0.16 6.16 6.66 22.48 0.15 6.31 16 4 C -0.24 -7.10 8.97 22.47 0.20 -6.89 16 5 C 0.17 4.74 6.70 22.48 0.15 4.89 16 6 O -0.49 -10.35 13.50 -92.42 -1.25 -11.60 16 7 C -0.22 -7.21 9.96 22.43 0.22 -6.99 16 8 C 0.14 5.84 7.00 22.35 0.16 6.00 16 9 F -0.13 -6.00 14.31 44.97 0.64 -5.36 16 10 C -0.14 -6.73 4.91 -19.71 -0.10 -6.83 16 11 C 0.25 13.96 2.76 43.42 0.12 14.08 16 12 H 0.02 1.33 7.14 -2.39 -0.02 1.31 16 13 N -0.85 -45.75 9.07 -174.94 -1.59 -47.34 16 14 C -0.56 -31.97 8.61 25.60 0.22 -31.75 16 15 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 16 C 0.02 1.12 5.38 84.65 0.46 1.58 16 17 N -0.92 -53.27 11.54 21.45 0.25 -53.02 16 18 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 24 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 25 H 0.17 3.73 6.29 -2.91 -0.02 3.71 16 26 H 0.42 4.20 9.06 -74.06 -0.67 3.53 16 27 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.32 16.72 6.14 -89.69 -0.55 16.17 16 29 H 0.34 19.45 7.08 -89.70 -0.63 18.81 16 30 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -69.61 262.64 1.27 -68.34 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.64 Total: 34.24 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 2.69 Total: -18.13 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -1.34 Total: -100.36 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -2.11 Total: -25.26 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.64 Total: -5.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.61 1.27 -68.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds