Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36058 * 117.00001 * 2 1 4 4 C 1.39096 * 120.07662 * 270.02364 * 3 2 1 5 5 O 1.35995 * 120.06079 * 359.95446 * 4 3 2 6 6 C 1.38585 * 119.87813 * 179.97438 * 4 3 2 7 7 C 1.38265 * 120.03943 * 359.72742 * 6 4 3 8 8 C 1.38219 * 120.15559 * 0.54996 * 7 6 4 9 9 C 1.50701 * 119.94078 * 179.72294 * 8 7 6 10 10 H 1.08993 * 109.47353 * 144.72290 * 9 8 7 11 11 N 1.46899 * 109.46884 * 24.72478 * 9 8 7 12 12 C 1.50695 * 109.47276 * 264.72675 * 9 8 7 13 13 H 1.08000 * 120.00146 * 24.74927 * 12 9 8 14 14 C 1.37880 * 119.99983 * 204.74808 * 12 9 8 15 15 N 1.31508 * 119.99828 * 358.02161 * 14 12 9 16 16 Si 1.86799 * 119.99950 * 178.01683 * 14 12 9 17 17 H 1.48507 * 109.47083 * 270.00435 * 16 14 12 18 18 H 1.48500 * 109.47123 * 29.99837 * 16 14 12 19 19 H 1.48491 * 109.47153 * 150.00057 * 16 14 12 20 20 C 1.38457 * 120.12153 * 359.44816 * 8 7 6 21 21 F 1.35094 * 120.02149 * 180.29925 * 20 8 7 22 22 H 1.09000 * 109.47177 * 299.99886 * 1 2 3 23 23 H 1.08994 * 109.47522 * 60.00263 * 1 2 3 24 24 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 25 25 H 0.96705 * 114.00298 * 90.00564 * 5 4 3 26 26 H 1.08005 * 119.98335 * 179.97438 * 6 4 3 27 27 H 1.07997 * 119.91978 * 180.28999 * 7 6 4 28 28 H 1.00902 * 111.00548 * 173.80002 * 11 9 8 29 29 H 1.00898 * 111.00445 * 297.75923 * 11 9 8 30 30 H 0.96997 * 120.00204 * 354.69296 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 2.3627 1.8336 -1.2037 5 8 2.0557 1.2301 -2.3831 6 6 2.9914 3.0687 -1.1989 7 6 3.2986 3.6843 0.0004 8 6 2.9904 3.0656 1.1974 9 6 3.3331 3.7382 2.5018 10 1 2.5600 3.5184 3.2380 11 7 3.4156 5.1905 2.2970 12 6 4.6601 3.2248 2.9983 13 1 5.3787 2.8218 2.3000 14 6 4.9568 3.2695 4.3440 15 7 4.0979 3.7957 5.1895 16 14 6.5786 2.5825 4.9662 17 1 6.4106 1.1462 5.3044 18 1 7.6138 2.7246 3.9110 19 1 7.0007 3.3303 6.1777 20 6 2.3623 1.8318 1.2003 21 9 2.0566 1.2317 2.3714 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.1795 1.4561 -2.7242 26 1 3.2379 3.5525 -2.1325 27 1 3.7843 4.6489 0.0019 28 1 3.5442 5.6727 3.1739 29 1 4.1503 5.4227 1.6456 30 1 3.2911 4.2212 4.8596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260189213.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = -103.389867 kcal Electronic energy + Delta-G solvation = -17503.155080 eV Core-core repulsion = 14406.438440 eV Total energy + Delta-G solvation = -3096.716641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.21025 -39.86105 -37.47514 -36.83213 -34.48618 -31.48297 -29.84231 -28.88871 -26.64306 -25.56171 -23.17747 -22.21783 -20.63517 -18.52077 -17.42078 -16.98968 -16.62877 -16.21277 -15.66240 -15.06340 -14.48154 -14.41393 -14.21598 -13.85484 -13.27669 -13.06999 -12.93630 -12.51257 -12.02927 -11.93374 -11.46584 -11.17503 -10.88617 -10.67888 -10.25506 -10.09189 -9.62147 -9.58426 -8.70133 -8.29026 -8.11495 -7.42094 -6.52105 -4.33020 1.36223 1.50225 3.37152 3.38458 3.54783 3.62993 3.95085 4.14339 4.41478 4.93583 5.13468 5.18542 5.29955 5.34809 5.41157 5.56695 5.64871 5.83624 5.99387 6.27225 6.43619 6.59984 6.71940 6.89918 7.23575 7.40339 7.75038 7.88779 8.14786 8.30187 8.53403 8.63595 9.40014 10.81229 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029494 B = 0.007763 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.120564 B = 3605.840782 C = 3925.941507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.028 3.972 4 C 0.084 3.916 5 O -0.485 6.485 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.051 4.051 9 C 0.223 3.777 10 H 0.059 0.941 11 N -0.852 5.852 12 C -0.625 4.625 13 H 0.052 0.948 14 C 0.031 3.969 15 N -0.901 5.901 16 Si 1.070 2.930 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.283 1.283 20 C 0.097 3.903 21 F -0.124 7.124 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.379 0.621 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.336 0.664 29 H 0.322 0.678 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -1.539 -11.230 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C -0.017 4.017 4 C 0.039 3.961 5 O -0.294 6.294 6 C -0.164 4.164 7 C -0.097 4.097 8 C -0.053 4.053 9 C 0.114 3.886 10 H 0.077 0.923 11 N -0.380 5.380 12 C -0.664 4.664 13 H 0.070 0.930 14 C -0.175 4.175 15 N -0.536 5.536 16 Si 0.898 3.102 17 H -0.211 1.211 18 H -0.213 1.213 19 H -0.209 1.209 20 C 0.077 3.923 21 F -0.102 7.102 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.234 0.766 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.133 0.867 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.158 -2.356 -10.024 11.517 hybrid contribution -0.589 0.279 -0.884 1.098 sum -5.747 -2.078 -10.908 12.503 Atomic orbital electron populations 1.22968 0.79736 1.03066 1.00290 1.86151 1.19430 1.23915 1.94233 1.18914 1.02835 0.88765 0.91169 1.18278 1.01995 0.91839 0.83989 1.84912 1.38581 1.70750 1.35141 1.21303 1.01947 0.94025 0.99080 1.20779 0.98795 1.00043 0.90063 1.20430 0.94044 0.92420 0.98412 1.18097 0.97106 0.85260 0.88140 0.92306 1.59600 1.52147 1.09758 1.16514 1.22472 1.01031 1.47151 0.95780 0.92954 1.25918 1.03688 0.94880 0.93030 1.70792 1.11101 1.34373 1.37374 0.83528 0.74317 0.76680 0.75712 1.21109 1.21324 1.20864 1.17738 1.01672 0.92366 0.80529 1.91490 1.90740 1.82717 1.45273 0.93521 0.94053 0.88830 0.76625 0.85049 0.84410 0.85249 0.86696 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.13 101.05 1.13 1.57 16 2 O -0.32 -5.81 10.07 -34.45 -0.35 -6.16 16 3 C 0.03 0.54 5.74 -39.09 -0.22 0.32 16 4 C 0.08 1.41 6.72 -39.14 -0.26 1.15 16 5 O -0.49 -6.90 13.29 -34.25 -0.46 -7.35 16 6 C -0.14 -2.30 9.98 -39.44 -0.39 -2.70 16 7 C -0.08 -1.43 9.26 -39.58 -0.37 -1.79 16 8 C -0.05 -1.12 5.04 -104.55 -0.53 -1.64 16 9 C 0.22 5.43 2.34 -70.02 -0.16 5.27 16 10 H 0.06 1.60 6.61 -51.93 -0.34 1.26 16 11 N -0.85 -18.21 8.75 -6.65 -0.06 -18.27 16 12 C -0.62 -16.92 8.57 -34.44 -0.30 -17.21 16 13 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 14 C 0.03 0.87 5.46 -17.82 -0.10 0.77 16 15 N -0.90 -26.01 13.59 55.43 0.75 -25.25 16 16 Si 1.07 24.87 29.90 -169.99 -5.08 19.79 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.10 2.13 7.25 -39.33 -0.28 1.84 16 21 F -0.12 -2.95 16.40 2.25 0.04 -2.91 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.38 3.36 9.07 45.56 0.41 3.77 16 26 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.14 2.29 6.33 -52.49 -0.33 1.96 16 28 H 0.34 7.44 8.55 -39.29 -0.34 7.10 16 29 H 0.32 6.36 7.31 -39.29 -0.29 6.07 16 30 H 0.27 7.74 6.32 -40.82 -0.26 7.48 16 LS Contribution 269.29 15.07 4.06 4.06 Total: -1.00 -31.43 269.29 -4.63 -36.05 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -2.04 Total: 12.48 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.49 Total: -12.44 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.69 Total: -43.53 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.80 Total: -13.51 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.43 -4.63 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189213.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.337 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds