Wall clock time and date at job start Mon Mar 30 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36054 * 116.99531 * 2 1 4 4 C 1.39098 * 120.08188 * 270.02048 * 3 2 1 5 5 O 1.35998 * 120.06007 * 359.95854 * 4 3 2 6 6 C 1.38580 * 119.88162 * 179.97438 * 4 3 2 7 7 C 1.38262 * 120.04072 * 0.02562 * 6 4 3 8 8 C 1.38225 * 120.15517 * 359.97438 * 7 6 4 9 9 C 1.50697 * 119.93713 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47001 * 220.00104 * 9 8 7 11 11 N 1.46901 * 109.47313 * 339.99796 * 9 8 7 12 12 C 1.50696 * 109.47538 * 99.99918 * 9 8 7 13 13 H 1.08004 * 119.99520 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00540 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00019 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00075 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47029 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47199 * 119.99911 * 16 14 12 19 19 H 1.48504 * 109.47002 * 239.99800 * 16 14 12 20 20 C 1.38449 * 120.12323 * 0.02562 * 8 7 6 21 21 F 1.35101 * 120.02233 * 179.97438 * 20 8 7 22 22 H 1.09005 * 109.47346 * 59.99964 * 1 2 3 23 23 H 1.08998 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47369 * 299.99668 * 1 2 3 25 25 H 0.96706 * 113.99990 * 89.99410 * 5 4 3 26 26 H 1.08007 * 119.97954 * 180.02562 * 6 4 3 27 27 H 1.07993 * 119.92100 * 180.27347 * 7 6 4 28 28 H 1.00905 * 110.99663 * 59.99931 * 11 9 8 29 29 H 1.00904 * 111.00270 * 183.95523 * 11 9 8 30 30 H 0.96999 * 120.00450 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3626 1.8337 -1.2036 5 8 2.0557 1.2302 -2.3831 6 6 2.9912 3.0688 -1.1988 7 6 3.3039 3.6816 0.0005 8 6 2.9905 3.0655 1.1975 9 6 3.3330 3.7381 2.5018 10 1 3.6953 2.9934 3.2105 11 7 4.3774 4.7458 2.2738 12 6 2.1034 4.4067 3.0604 13 1 1.1674 4.3498 2.5247 14 6 2.1731 5.0901 4.2559 15 7 3.3125 5.1581 4.9090 16 14 0.6486 5.9182 4.9485 17 1 -0.4965 5.6952 4.0298 18 1 0.3345 5.3422 6.2808 19 1 0.8962 7.3760 5.0854 20 6 2.3625 1.8316 1.2004 21 9 2.0576 1.2310 2.3716 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.1794 1.4562 -2.7242 26 1 3.2370 3.5529 -2.1324 27 1 3.7897 4.6461 0.0021 28 1 4.0656 5.4480 1.6197 29 1 4.6705 5.1660 3.1431 30 1 3.3615 5.6385 5.7502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260189219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:48 Heat of formation + Delta-G solvation = -122.845934 kcal Electronic energy + Delta-G solvation = -17481.855262 eV Core-core repulsion = 14384.294943 eV Total energy + Delta-G solvation = -3097.560319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.81664 -41.14649 -38.79019 -38.06930 -35.98548 -33.35459 -31.18910 -30.19645 -27.94397 -27.73376 -24.86938 -23.54462 -21.99411 -19.75481 -18.73938 -18.45128 -18.10889 -17.67104 -16.95918 -16.65833 -16.14108 -15.98337 -15.58248 -15.42191 -14.83871 -14.53642 -14.32194 -13.95308 -13.44059 -13.09205 -12.86938 -12.75217 -12.71430 -12.45949 -11.98020 -11.91383 -11.70243 -10.90722 -10.76375 -9.65014 -9.50803 -9.21774 -8.17251 -6.43173 0.02722 0.14443 1.33978 1.37101 1.47772 2.27766 2.40526 2.70012 2.91951 3.00940 3.59385 3.92677 4.03468 4.30607 4.33668 4.38696 4.51157 4.56552 4.71195 4.90509 5.06571 5.21085 5.31892 5.56759 5.58887 5.74756 5.95252 6.27128 6.57716 6.82385 6.83851 7.07748 7.33060 8.78429 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.007874 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.056656 B = 3555.066564 C = 3984.814120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C 0.023 3.977 4 C 0.101 3.899 5 O -0.485 6.485 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.087 4.087 9 C 0.247 3.753 10 H 0.007 0.993 11 N -0.837 5.837 12 C -0.556 4.556 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.914 5.914 16 Si 0.961 3.039 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.062 3.938 21 F -0.147 7.147 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.033 0.967 25 H 0.407 0.593 26 H 0.174 0.826 27 H 0.154 0.846 28 H 0.324 0.676 29 H 0.348 0.652 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -3.074 -12.717 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C -0.023 4.023 4 C 0.056 3.944 5 O -0.298 6.298 6 C -0.144 4.144 7 C -0.092 4.092 8 C -0.088 4.088 9 C 0.137 3.863 10 H 0.025 0.975 11 N -0.367 5.367 12 C -0.596 4.596 13 H 0.065 0.935 14 C -0.178 4.178 15 N -0.554 5.554 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.042 3.958 21 F -0.126 7.126 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.052 0.948 25 H 0.266 0.734 26 H 0.191 0.809 27 H 0.171 0.829 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.306 -4.074 -12.737 14.049 hybrid contribution -2.034 1.093 1.670 2.850 sum -6.340 -2.981 -11.067 13.098 Atomic orbital electron populations 1.23258 0.77336 1.05055 1.01063 1.86078 1.21821 1.23677 1.94322 1.19069 1.02967 0.89115 0.91101 1.18303 1.00642 0.91499 0.83986 1.84842 1.40726 1.70635 1.33567 1.21653 0.99683 0.93390 0.99705 1.20994 0.97798 1.00845 0.89599 1.20459 0.97139 0.92489 0.98729 1.17595 0.89867 0.91156 0.87690 0.97524 1.59484 1.39967 1.19245 1.18029 1.21916 0.96501 1.34106 1.07043 0.93546 1.25750 0.99177 0.96520 0.96361 1.69836 1.26279 1.42675 1.16573 0.85465 0.79537 0.78372 0.77996 1.19586 1.20831 1.19691 1.18124 1.03779 0.93102 0.80773 1.91409 1.91262 1.83153 1.46781 0.91354 0.86185 0.94828 0.73410 0.80856 0.82887 0.86450 0.83656 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.13 113.37 1.26 1.92 16 2 O -0.34 -11.83 10.07 -80.28 -0.81 -12.64 16 3 C 0.02 0.83 5.74 22.59 0.13 0.96 16 4 C 0.10 3.05 6.72 22.56 0.15 3.20 16 5 O -0.49 -11.57 13.29 -79.65 -1.06 -12.63 16 6 C -0.13 -3.53 9.98 22.36 0.22 -3.31 16 7 C -0.07 -2.58 9.25 22.27 0.21 -2.37 16 8 C -0.09 -3.81 5.03 -19.82 -0.10 -3.91 16 9 C 0.25 12.72 2.66 43.42 0.12 12.83 16 10 H 0.01 0.41 7.94 -2.39 -0.02 0.39 16 11 N -0.84 -39.04 8.67 -174.96 -1.52 -40.55 16 12 C -0.56 -30.25 8.70 25.60 0.22 -30.03 16 13 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 14 C 0.02 1.21 5.38 84.65 0.46 1.66 16 15 N -0.91 -50.73 11.54 21.44 0.25 -50.48 16 16 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.06 2.74 7.24 22.44 0.16 2.90 16 21 F -0.15 -7.20 16.50 44.97 0.74 -6.46 16 22 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.41 5.26 9.07 -74.05 -0.67 4.59 16 26 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.15 4.85 6.23 -2.91 -0.02 4.83 16 28 H 0.32 13.58 7.27 -89.69 -0.65 12.93 16 29 H 0.35 17.63 7.08 -89.69 -0.64 16.99 16 30 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -66.28 268.88 1.71 -64.57 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.75 Total: 29.57 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 2.83 Total: -16.13 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -1.27 Total: -91.04 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -1.87 Total: -25.27 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.74 Total: -6.46 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -66.28 1.71 -64.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.279 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds