Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 116.99477 * 2 1 4 4 C 1.38674 * 120.01193 * 359.97438 * 3 2 1 5 5 C 1.38565 * 119.91615 * 180.02562 * 4 3 2 6 6 O 1.35950 * 120.03220 * 179.97438 * 5 4 3 7 7 C 1.38950 * 119.93386 * 359.72306 * 5 4 3 8 8 F 1.35097 * 119.99921 * 180.27761 * 7 5 4 9 9 C 1.38292 * 120.01519 * 0.52903 * 7 5 4 10 10 C 1.50696 * 119.96077 * 179.76695 * 9 7 5 11 11 H 1.09006 * 109.47145 * 39.72691 * 10 9 7 12 12 N 1.46904 * 109.47112 * 159.72184 * 10 9 7 13 13 C 1.50699 * 109.47606 * 279.72443 * 10 9 7 14 14 H 1.07999 * 119.99669 * 354.47796 * 13 10 9 15 15 C 1.37869 * 120.00302 * 174.47583 * 13 10 9 16 16 N 1.31509 * 120.00282 * 163.83108 * 15 13 10 17 17 Si 1.86807 * 119.99996 * 343.82872 * 15 13 10 18 18 H 1.48496 * 109.46947 * 270.00070 * 17 15 13 19 19 H 1.48501 * 109.46859 * 29.99954 * 17 15 13 20 20 H 1.48491 * 109.47044 * 149.99959 * 17 15 13 21 21 C 1.38258 * 120.07906 * 359.49485 * 9 7 5 22 22 H 1.08997 * 109.47087 * 299.99953 * 1 2 3 23 23 H 1.09002 * 109.47084 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.03824 * 359.97438 * 4 3 2 26 26 H 0.96701 * 114.00106 * 89.99802 * 6 5 4 27 27 H 1.00904 * 110.99471 * 66.10979 * 12 10 9 28 28 H 1.00901 * 110.99943 * 190.05863 * 12 10 9 29 29 H 0.97003 * 119.99705 * 354.92249 * 16 15 13 30 30 H 1.08001 * 119.96278 * 180.25357 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2909 2.3744 -0.0005 5 6 1.9220 3.6081 -0.0011 6 8 1.1840 4.7498 -0.0021 7 6 3.3097 3.6770 0.0047 8 9 3.9263 4.8790 0.0099 9 6 4.0601 2.5153 0.0000 10 6 5.5651 2.5916 0.0010 11 1 5.8877 3.3965 0.6615 12 7 6.1197 1.3167 0.4757 13 6 6.0554 2.8628 -1.3979 14 1 5.3565 2.8807 -2.2211 15 6 7.3962 3.0880 -1.6270 16 7 7.8770 3.0088 -2.8485 17 14 8.5299 3.5059 -0.2023 18 1 8.5687 4.9786 -0.0162 19 1 8.0243 2.8634 1.0374 20 1 9.8976 3.0077 -0.4956 21 6 3.4311 1.2841 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2123 2.3187 -0.0014 26 1 0.9701 5.0807 0.8810 27 1 5.9184 0.5709 -0.1734 28 1 7.1119 1.3935 0.6418 29 1 7.3052 2.7202 -3.5770 30 1 4.0190 0.3781 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = -123.880776 kcal Electronic energy + Delta-G solvation = -17376.065488 eV Core-core repulsion = 14278.460295 eV Total energy + Delta-G solvation = -3097.605193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.72984 -41.26833 -39.24711 -38.23231 -35.92927 -33.89829 -30.92912 -30.68728 -27.97360 -27.85327 -24.71272 -23.46324 -21.78816 -19.95568 -19.52548 -18.49850 -18.29109 -18.07968 -16.91412 -16.60711 -16.37213 -15.75200 -15.53573 -15.35590 -14.96583 -14.74050 -14.39290 -14.30215 -13.97445 -13.19397 -13.11441 -12.82113 -12.40924 -12.15252 -11.88183 -11.69512 -11.58373 -11.40138 -10.70777 -9.88387 -9.58174 -9.09426 -8.73197 -6.53840 0.06992 0.18086 1.42006 1.47115 1.65934 2.27240 2.39269 2.45643 2.90735 2.99408 3.40021 3.73983 3.90208 4.09288 4.23652 4.40718 4.42897 4.55852 4.59143 4.75081 4.92625 5.05349 5.12845 5.43450 5.54082 5.66017 5.88879 6.30295 6.34686 6.45190 6.68230 6.75174 7.25756 8.49426 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.028341 B = 0.008082 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.723697 B = 3463.818355 C = 4014.923305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.138 3.862 4 C -0.216 4.216 5 C 0.116 3.884 6 O -0.494 6.494 7 C 0.001 3.999 8 F -0.148 7.148 9 C -0.034 4.034 10 C 0.221 3.779 11 H 0.045 0.955 12 N -0.838 5.838 13 C -0.624 4.624 14 H 0.012 0.988 15 C -0.012 4.012 16 N -0.926 5.926 17 Si 1.084 2.916 18 H -0.278 1.278 19 H -0.235 1.235 20 H -0.277 1.277 21 C -0.136 4.136 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.174 0.826 26 H 0.413 0.587 27 H 0.334 0.666 28 H 0.334 0.666 29 H 0.254 0.746 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -3.901 10.119 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.092 3.908 4 C -0.235 4.235 5 C 0.070 3.930 6 O -0.307 6.307 7 C -0.019 4.019 8 F -0.127 7.127 9 C -0.035 4.035 10 C 0.110 3.890 11 H 0.063 0.937 12 N -0.369 5.369 13 C -0.663 4.663 14 H 0.030 0.970 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.904 3.096 18 H -0.204 1.204 19 H -0.158 1.158 20 H -0.203 1.203 21 C -0.155 4.155 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.192 0.808 26 H 0.272 0.728 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.063 0.937 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.626 -3.595 10.519 17.585 hybrid contribution -0.981 0.364 -1.606 1.916 sum -14.607 -3.231 8.913 17.414 Atomic orbital electron populations 1.23453 0.76016 1.06013 1.02558 1.86103 1.23854 1.25468 1.88397 1.18758 0.91467 0.84897 0.95672 1.21382 1.01956 0.89506 1.10625 1.18038 0.86370 0.87430 1.01198 1.84784 1.71512 1.38786 1.35595 1.18192 0.90941 0.80797 1.11948 1.91396 1.83543 1.43225 1.94562 1.19883 0.96958 0.91460 0.95226 1.17980 0.87353 0.90359 0.93305 0.93724 1.59652 1.19083 1.06615 1.51538 1.22599 0.94815 1.55324 0.93597 0.96992 1.27287 0.98663 0.92338 1.02883 1.70917 1.38880 1.44743 1.01480 0.83569 0.74483 0.78039 0.73528 1.20424 1.15831 1.20257 1.20169 0.91816 0.97715 1.05784 0.90923 0.91866 0.85758 0.80833 0.72752 0.85360 0.85192 0.93679 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.69 10.50 -92.91 -0.98 -9.67 16 3 C 0.14 4.39 6.68 22.48 0.15 4.54 16 4 C -0.22 -6.14 8.97 22.45 0.20 -5.94 16 5 C 0.12 3.91 6.71 22.52 0.15 4.06 16 6 O -0.49 -14.02 13.37 -92.98 -1.24 -15.27 16 7 C 0.00 0.06 7.24 22.45 0.16 0.23 16 8 F -0.15 -6.88 16.49 44.97 0.74 -6.14 16 9 C -0.03 -1.48 5.03 -19.85 -0.10 -1.58 16 10 C 0.22 10.65 2.13 43.42 0.09 10.74 16 11 H 0.04 2.22 6.53 -2.38 -0.02 2.20 16 12 N -0.84 -35.34 8.49 -174.95 -1.49 -36.83 16 13 C -0.62 -35.93 8.95 25.60 0.23 -35.70 16 14 H 0.01 0.77 7.99 -2.91 -0.02 0.74 16 15 C -0.01 -0.68 5.44 84.65 0.46 -0.22 16 16 N -0.93 -57.75 13.70 21.44 0.29 -57.45 16 17 Si 1.08 48.94 26.56 68.60 1.82 50.77 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.23 -9.19 5.46 99.48 0.54 -8.65 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.14 -5.21 9.21 22.38 0.21 -5.00 16 22 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 23 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 24 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 25 H 0.17 3.51 6.30 -2.91 -0.02 3.49 16 26 H 0.41 6.93 9.06 -74.06 -0.67 6.26 16 27 H 0.33 13.76 7.59 -89.69 -0.68 13.08 16 28 H 0.33 13.63 5.76 -89.69 -0.52 13.11 16 29 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 30 H 0.14 5.33 6.40 -2.91 -0.02 5.31 16 Total: -1.00 -72.36 260.75 0.97 -71.39 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.85 Total: 30.75 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 2.67 Total: -27.55 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -1.19 Total: -94.28 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -2.22 Total: -24.94 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.74 Total: -6.14 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.82 Total: 50.77 kcal Total: -72.36 0.97 -71.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.491 kcal (2) G-P(sol) polarization free energy of solvation -72.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds