Wall clock time and date at job start Mon Mar 30 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 116.99899 * 2 1 4 4 C 1.38622 * 120.06009 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.03628 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.16446 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.94217 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47237 * 219.99916 * 7 6 5 9 9 N 1.46891 * 109.47472 * 340.00177 * 7 6 5 10 10 C 1.50703 * 109.47098 * 100.00332 * 7 6 5 11 11 H 1.07999 * 120.00159 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00037 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00031 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00155 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47284 * 89.99777 * 14 12 10 16 16 H 1.48497 * 109.47373 * 210.00101 * 14 12 10 17 17 H 1.48500 * 109.46916 * 330.00371 * 14 12 10 18 18 C 1.38415 * 120.11430 * 359.75052 * 6 5 4 19 19 F 1.35103 * 120.02174 * 180.25266 * 18 6 5 20 20 C 1.38758 * 119.96301 * 0.50492 * 18 6 5 21 21 O 1.36055 * 120.08319 * 179.77144 * 20 18 6 22 22 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47725 * 300.00317 * 1 2 3 24 24 H 1.09000 * 109.46747 * 60.00914 * 1 2 3 25 25 H 1.07999 * 119.98290 * 359.96035 * 4 3 2 26 26 H 1.08004 * 119.92037 * 179.97438 * 5 4 3 27 27 H 1.00903 * 111.00166 * 296.05068 * 9 7 6 28 28 H 1.00901 * 111.00169 * 59.99957 * 9 7 6 29 29 H 0.97002 * 120.00120 * 180.02562 * 13 12 10 30 30 H 0.96701 * 113.99793 * 269.72814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2926 2.3751 0.0005 5 6 1.9206 3.6063 0.0011 6 6 3.3011 3.6821 0.0016 7 6 3.9806 5.0272 0.0028 8 1 4.8473 4.9970 -0.6575 9 7 3.0400 6.0514 -0.4705 10 6 4.4269 5.3633 1.4024 11 1 4.2371 4.6722 2.2104 12 6 5.0775 6.5531 1.6515 13 7 5.3091 7.3944 0.6676 14 14 5.6314 6.9694 3.3862 15 1 7.0086 6.4578 3.6023 16 1 5.6160 8.4428 3.5705 17 1 4.7098 6.3384 4.3648 18 6 4.0602 2.5247 0.0068 19 9 5.4090 2.6009 0.0125 20 6 3.4350 1.2859 0.0009 21 8 4.1787 0.1467 0.0013 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.2140 2.3194 0.0003 26 1 1.3314 4.5116 0.0011 27 1 2.7755 5.8839 -1.4297 28 1 2.2272 6.0990 0.1256 29 1 5.7672 8.2313 0.8427 30 1 4.3941 -0.1827 -0.8820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260210064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:18 Heat of formation + Delta-G solvation = -91.428053 kcal Electronic energy + Delta-G solvation = -17343.431158 eV Core-core repulsion = 14247.233221 eV Total energy + Delta-G solvation = -3096.197938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.18412 -40.06243 -37.58167 -36.83556 -33.98097 -31.52184 -29.62060 -28.94878 -27.04764 -25.95482 -23.06789 -22.04297 -20.36269 -18.41238 -17.47622 -16.81588 -16.54551 -15.81016 -15.57004 -15.10429 -14.71689 -14.51080 -14.28270 -14.01578 -13.66184 -13.07804 -12.58121 -12.16750 -12.07751 -11.98535 -11.35825 -10.94088 -10.86646 -10.73992 -10.56435 -10.44786 -9.79620 -9.26411 -8.44110 -8.27514 -7.65550 -7.20608 -5.88474 -4.03692 1.40198 1.65295 3.22655 3.35747 3.41925 3.45411 3.86040 4.30386 4.50488 4.89495 5.05408 5.09464 5.14982 5.28994 5.36177 5.40699 5.65375 5.68287 6.12206 6.24028 6.38921 6.53452 6.74579 7.06569 7.32085 7.38668 7.89316 7.91593 8.13988 8.55133 8.92545 9.09518 9.64933 11.15796 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.007119 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.884520 B = 3932.116327 C = 4195.560550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.101 3.899 4 C -0.204 4.204 5 C -0.075 4.075 6 C -0.126 4.126 7 C 0.260 3.740 8 H 0.054 0.946 9 N -0.808 5.808 10 C -0.530 4.530 11 H 0.053 0.947 12 C 0.085 3.915 13 N -0.847 5.847 14 Si 0.886 3.114 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.119 3.881 19 F -0.119 7.119 20 C 0.032 3.968 21 O -0.478 6.478 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.300 0.700 28 H 0.319 0.681 29 H 0.256 0.744 30 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -11.113 -4.013 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.056 3.944 4 C -0.223 4.223 5 C -0.094 4.094 6 C -0.130 4.130 7 C 0.150 3.850 8 H 0.071 0.929 9 N -0.334 5.334 10 C -0.569 4.569 11 H 0.071 0.929 12 C -0.122 4.122 13 N -0.481 5.481 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.098 3.902 19 F -0.097 7.097 20 C -0.015 4.015 21 O -0.286 6.286 22 H 0.115 0.885 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.485 -10.516 -3.320 13.914 hybrid contribution -0.383 -0.515 0.389 0.750 sum -8.868 -11.031 -2.932 14.454 Atomic orbital electron populations 1.23028 0.78844 1.03545 1.01326 1.86088 1.20853 1.26332 1.89158 1.18891 0.90707 0.84773 1.00045 1.21082 0.99726 0.91826 1.09680 1.20718 0.93648 0.97045 0.97951 1.21867 0.94063 0.98851 0.98213 1.18114 0.90567 0.78860 0.97473 0.92881 1.59138 1.18505 1.52702 1.03094 1.20754 1.39592 1.04414 0.92095 0.92858 1.24918 0.94795 0.96055 0.96414 1.70096 1.38470 1.08939 1.30605 0.86716 0.79180 0.77396 0.85343 1.20628 1.21197 1.19986 1.17577 0.77895 0.92149 1.02560 1.91506 1.28009 1.96916 1.93280 1.17594 0.86904 0.85463 1.11515 1.84936 1.71806 1.39098 1.32783 0.88506 0.92693 0.92802 0.85254 0.84970 0.88947 0.86804 0.93366 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.55 10.28 -34.27 -0.35 -4.90 16 3 C 0.10 1.68 6.70 -39.13 -0.26 1.41 16 4 C -0.20 -3.12 9.04 -39.45 -0.36 -3.48 16 5 C -0.08 -1.31 9.24 -39.58 -0.37 -1.68 16 6 C -0.13 -2.65 5.02 -104.55 -0.53 -3.18 16 7 C 0.26 6.40 2.56 -70.02 -0.18 6.22 16 8 H 0.05 1.47 7.95 -51.93 -0.41 1.06 16 9 N -0.81 -18.18 8.01 -6.66 -0.05 -18.23 16 10 C -0.53 -14.70 8.70 -34.44 -0.30 -15.00 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.09 2.39 5.39 -17.82 -0.10 2.30 16 13 N -0.85 -24.63 12.77 55.43 0.71 -23.92 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.12 2.49 7.24 -39.32 -0.28 2.20 16 19 F -0.12 -2.69 16.50 2.25 0.04 -2.65 16 20 C 0.03 0.59 6.72 -39.08 -0.26 0.32 16 21 O -0.48 -8.12 13.15 -34.46 -0.45 -8.57 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 25 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 26 H 0.13 2.09 6.23 -52.48 -0.33 1.76 16 27 H 0.30 5.90 9.06 -39.29 -0.36 5.54 16 28 H 0.32 6.68 7.28 -39.29 -0.29 6.40 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.38 4.50 9.07 45.56 0.41 4.91 16 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -32.42 267.39 -4.80 -37.23 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.06 Total: 9.99 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.64 Total: -9.61 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.65 Total: -42.15 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.81 Total: -13.47 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.42 -4.80 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.200 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds