Wall clock time and date at job start Mon Mar 30 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 116.99899 * 2 1 4 4 C 1.38622 * 120.06009 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.03628 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.16446 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.94217 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47237 * 219.99916 * 7 6 5 9 9 N 1.46891 * 109.47472 * 340.00177 * 7 6 5 10 10 C 1.50703 * 109.47098 * 100.00332 * 7 6 5 11 11 H 1.07999 * 120.00159 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00037 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00031 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00155 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47284 * 89.99777 * 14 12 10 16 16 H 1.48497 * 109.47373 * 210.00101 * 14 12 10 17 17 H 1.48500 * 109.46916 * 330.00371 * 14 12 10 18 18 C 1.38415 * 120.11430 * 359.75052 * 6 5 4 19 19 F 1.35103 * 120.02174 * 180.25266 * 18 6 5 20 20 C 1.38758 * 119.96301 * 0.50492 * 18 6 5 21 21 O 1.36055 * 120.08319 * 179.77144 * 20 18 6 22 22 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47725 * 300.00317 * 1 2 3 24 24 H 1.09000 * 109.46747 * 60.00914 * 1 2 3 25 25 H 1.07999 * 119.98290 * 359.96035 * 4 3 2 26 26 H 1.08004 * 119.92037 * 179.97438 * 5 4 3 27 27 H 1.00903 * 111.00166 * 296.05068 * 9 7 6 28 28 H 1.00901 * 111.00169 * 59.99957 * 9 7 6 29 29 H 0.97002 * 120.00120 * 180.02562 * 13 12 10 30 30 H 0.96701 * 113.99793 * 269.72814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2926 2.3751 0.0005 5 6 1.9206 3.6063 0.0011 6 6 3.3011 3.6821 0.0016 7 6 3.9806 5.0272 0.0028 8 1 4.8473 4.9970 -0.6575 9 7 3.0400 6.0514 -0.4705 10 6 4.4269 5.3633 1.4024 11 1 4.2371 4.6722 2.2104 12 6 5.0775 6.5531 1.6515 13 7 5.3091 7.3944 0.6676 14 14 5.6314 6.9694 3.3862 15 1 7.0086 6.4578 3.6023 16 1 5.6160 8.4428 3.5705 17 1 4.7098 6.3384 4.3648 18 6 4.0602 2.5247 0.0068 19 9 5.4090 2.6009 0.0125 20 6 3.4350 1.2859 0.0009 21 8 4.1787 0.1467 0.0013 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.2140 2.3194 0.0003 26 1 1.3314 4.5116 0.0011 27 1 2.7755 5.8839 -1.4297 28 1 2.2272 6.0990 0.1256 29 1 5.7672 8.2313 0.8427 30 1 4.3941 -0.1827 -0.8820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260210064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:18 Heat of formation + Delta-G solvation = -116.894710 kcal Electronic energy + Delta-G solvation = -17344.535475 eV Core-core repulsion = 14247.233221 eV Total energy + Delta-G solvation = -3097.302255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.82180 -41.32922 -38.85462 -38.26938 -35.72777 -33.50721 -31.02703 -30.27428 -28.25468 -27.74277 -24.72986 -23.42964 -21.97530 -19.70209 -18.85868 -18.56923 -18.19069 -17.12484 -16.96921 -16.60320 -16.29924 -16.22320 -15.78753 -15.45461 -15.19309 -14.44154 -14.34445 -13.84425 -13.47797 -13.06569 -13.02355 -12.73963 -12.60276 -12.10491 -12.03535 -11.93354 -11.61242 -11.20486 -10.57761 -9.68780 -9.12237 -8.93813 -8.00171 -6.22234 0.01880 0.24929 1.41132 1.42595 1.51839 2.12811 2.40666 2.54101 3.02408 3.23056 3.57954 3.85061 3.94901 4.17669 4.32403 4.38514 4.44013 4.46478 4.76172 4.83470 5.01427 5.11134 5.19074 5.52917 5.63756 5.72451 6.13910 6.23246 6.61501 6.72941 7.06657 7.25811 7.49744 9.02672 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.007119 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.884520 B = 3932.116327 C = 4195.560550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.112 3.888 4 C -0.185 4.185 5 C -0.070 4.070 6 C -0.153 4.153 7 C 0.268 3.732 8 H 0.008 0.992 9 N -0.816 5.816 10 C -0.543 4.543 11 H 0.039 0.961 12 C 0.038 3.962 13 N -0.877 5.877 14 Si 0.946 3.054 15 H -0.281 1.281 16 H -0.278 1.278 17 H -0.271 1.271 18 C 0.086 3.914 19 F -0.142 7.142 20 C 0.026 3.974 21 O -0.489 6.489 22 H 0.123 0.877 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.175 0.825 26 H 0.150 0.850 27 H 0.317 0.683 28 H 0.329 0.671 29 H 0.257 0.743 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -12.243 -3.611 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.203 4.203 5 C -0.088 4.088 6 C -0.156 4.156 7 C 0.158 3.842 8 H 0.026 0.974 9 N -0.345 5.345 10 C -0.582 4.582 11 H 0.058 0.942 12 C -0.166 4.166 13 N -0.513 5.513 14 Si 0.772 3.228 15 H -0.207 1.207 16 H -0.203 1.203 17 H -0.196 1.196 18 C 0.065 3.935 19 F -0.121 7.121 20 C -0.020 4.020 21 O -0.300 6.300 22 H 0.141 0.859 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.192 0.808 26 H 0.168 0.832 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.066 0.934 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.028 -11.669 -2.932 16.321 hybrid contribution 0.283 -0.341 0.207 0.489 sum -10.745 -12.010 -2.725 16.344 Atomic orbital electron populations 1.23468 0.75887 1.05939 1.02732 1.86098 1.23801 1.25140 1.88534 1.18937 0.90072 0.86111 0.98294 1.21457 1.01746 0.90156 1.06954 1.20898 0.92060 0.98883 0.96965 1.21528 0.95640 0.96950 1.01508 1.17606 0.90122 0.81562 0.94925 0.97427 1.58860 1.18730 1.52522 1.04346 1.21032 1.39677 1.04116 0.93381 0.94228 1.25626 0.94970 0.96085 0.99935 1.70206 1.39438 1.09289 1.32349 0.85777 0.78517 0.77409 0.81138 1.20677 1.20328 1.19556 1.17921 0.77139 0.93542 1.04857 1.91430 1.29719 1.97118 1.93815 1.17628 0.88060 0.84845 1.11472 1.84861 1.71910 1.38423 1.34814 0.85916 0.91606 0.90885 0.80821 0.83248 0.87111 0.85683 0.93390 0.74192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -8.26 10.28 -79.57 -0.82 -9.07 16 3 C 0.11 3.40 6.70 22.56 0.15 3.55 16 4 C -0.18 -4.95 9.04 22.36 0.20 -4.75 16 5 C -0.07 -2.30 9.24 22.27 0.21 -2.09 16 6 C -0.15 -6.48 5.02 -19.82 -0.10 -6.58 16 7 C 0.27 13.65 2.56 43.42 0.11 13.76 16 8 H 0.01 0.46 7.95 -2.39 -0.02 0.45 16 9 N -0.82 -36.96 8.01 -174.97 -1.40 -38.36 16 10 C -0.54 -30.93 8.70 25.60 0.22 -30.71 16 11 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 12 C 0.04 2.16 5.39 84.65 0.46 2.61 16 13 N -0.88 -52.07 12.77 21.45 0.27 -51.80 16 14 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 C 0.09 3.68 7.24 22.44 0.16 3.84 16 19 F -0.14 -6.81 16.50 44.97 0.74 -6.06 16 20 C 0.03 0.96 6.72 22.59 0.15 1.11 16 21 O -0.49 -16.28 13.15 -80.26 -1.06 -17.33 16 22 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 24 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 25 H 0.17 3.10 6.30 -2.91 -0.02 3.08 16 26 H 0.15 4.32 6.23 -2.91 -0.02 4.31 16 27 H 0.32 12.44 9.06 -89.69 -0.81 11.63 16 28 H 0.33 13.58 7.28 -89.69 -0.65 12.93 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.40 9.18 9.07 -74.06 -0.67 8.51 16 Total: -1.00 -71.85 267.39 1.52 -70.33 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.92 Total: 23.18 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 2.68 Total: -17.94 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -1.13 Total: -90.16 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.87 Total: -26.41 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.74 Total: -6.06 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.85 1.52 -70.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.566 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds