Wall clock time and date at job start Mon Mar 30 2020 03:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35951 * 116.99661 * 2 1 4 4 C 1.38799 * 120.04149 * 270.25027 * 3 2 1 5 5 F 1.35107 * 120.06361 * 0.02562 * 4 3 2 6 6 C 1.38748 * 119.86598 * 180.29531 * 4 3 2 7 7 O 1.35954 * 120.03639 * 179.74817 * 6 4 3 8 8 C 1.38747 * 119.93057 * 359.73469 * 6 4 3 9 9 C 1.38183 * 120.07090 * 359.97438 * 8 6 4 10 10 C 1.38224 * 120.13113 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.95996 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47210 * 145.00043 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99712 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99750 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.08999 * 109.46805 * 299.99587 * 1 2 3 23 23 H 1.08994 * 109.47325 * 59.99487 * 1 2 3 24 24 H 1.08999 * 109.46854 * 179.97438 * 1 2 3 25 25 H 0.96694 * 114.00733 * 269.98418 * 7 6 4 26 26 H 1.07997 * 119.96800 * 179.97438 * 8 6 4 27 27 H 1.07989 * 119.93266 * 179.97438 * 9 8 6 28 28 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 29 29 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 30 30 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3569 1.8329 -1.2015 5 9 2.0462 1.2354 -2.3728 6 6 2.9923 3.0663 -1.1973 7 8 3.3029 3.6759 -2.3722 8 6 3.3101 3.6772 0.0072 9 6 2.9940 3.0588 1.2018 10 6 2.3601 1.8305 1.2008 11 6 2.0167 1.1598 2.5059 12 1 1.0751 0.6209 2.4008 13 7 1.8846 2.1756 3.5588 14 6 3.1108 0.1918 2.8763 15 1 3.9691 0.0743 2.2314 16 6 3.0189 -0.5394 4.0417 17 7 1.9739 -0.3961 4.8272 18 14 4.3787 -1.7336 4.5046 19 1 5.6596 -0.9952 4.6444 20 1 4.0426 -2.3910 5.7930 21 1 4.5147 -2.7643 3.4442 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 4.1781 3.4480 -2.7143 26 1 3.8050 4.6371 0.0112 27 1 3.2428 3.5361 2.1380 28 1 1.5917 1.7581 4.4294 29 1 2.7452 2.6893 3.6756 30 1 1.9091 -0.9108 5.6469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260220365.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:28 Heat of formation + Delta-G solvation = -122.106882 kcal Electronic energy + Delta-G solvation = -17566.827775 eV Core-core repulsion = 14469.299503 eV Total energy + Delta-G solvation = -3097.528272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.92220 -41.04915 -39.24924 -37.62576 -35.98548 -33.33114 -31.14013 -30.09621 -28.11423 -27.65181 -24.81890 -23.52082 -21.98532 -19.82600 -18.66767 -18.45300 -17.94464 -17.78995 -16.97752 -16.55661 -16.22737 -16.05358 -15.57036 -15.47126 -14.81676 -14.50895 -14.25636 -13.89047 -13.42557 -13.17478 -12.91565 -12.79805 -12.64077 -12.44931 -11.92313 -11.79490 -11.55305 -10.94729 -10.70034 -9.65631 -9.49948 -9.18100 -8.12157 -6.35362 0.03709 0.11983 1.38224 1.40397 1.47637 2.31388 2.43571 2.66818 3.03863 3.14570 3.36198 3.85872 4.05589 4.27536 4.37534 4.42409 4.56250 4.60060 4.70637 4.94385 5.02327 5.13074 5.35744 5.63735 5.65825 5.76352 6.02880 6.47534 6.63610 6.73881 6.89136 7.11374 7.38834 8.82831 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.008010 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.553091 B = 3494.590400 C = 3738.072798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.343 6.343 3 C 0.055 3.945 4 C 0.031 3.969 5 F -0.140 7.140 6 C 0.071 3.929 7 O -0.491 6.491 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.056 4.056 11 C 0.251 3.749 12 H 0.021 0.979 13 N -0.841 5.841 14 C -0.549 4.549 15 H 0.042 0.958 16 C 0.026 3.974 17 N -0.914 5.914 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.111 0.889 25 H 0.410 0.590 26 H 0.175 0.825 27 H 0.150 0.850 28 H 0.348 0.652 29 H 0.322 0.678 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 6.431 -8.392 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.260 6.260 3 C 0.010 3.990 4 C 0.010 3.990 5 F -0.119 7.119 6 C 0.026 3.974 7 O -0.303 6.303 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.057 4.057 11 C 0.141 3.859 12 H 0.039 0.961 13 N -0.371 5.371 14 C -0.588 4.588 15 H 0.060 0.940 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.207 1.207 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.269 0.731 26 H 0.192 0.808 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.133 0.867 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.101 6.730 -8.682 11.040 hybrid contribution 1.400 -1.817 0.543 2.358 sum 2.502 4.913 -8.139 9.830 Atomic orbital electron populations 1.23107 0.77935 1.04435 1.00429 1.86060 1.21221 1.24473 1.94198 1.18585 1.01517 0.87937 0.90988 1.18635 1.06503 0.93242 0.80575 1.91407 1.91436 1.83573 1.45439 1.18167 1.01858 0.89804 0.87610 1.84802 1.41564 1.68726 1.35234 1.21592 1.00000 1.01614 0.89392 1.21059 0.97194 0.93627 0.99316 1.20690 0.95930 0.94284 0.94786 1.17612 0.94690 0.88198 0.85407 0.96106 1.59540 1.35658 1.29066 1.12844 1.21833 1.06319 1.24389 1.06301 0.93991 1.25641 0.97772 0.97809 0.96259 1.69808 1.29474 1.42546 1.13543 0.85663 0.79857 0.79193 0.77214 1.19391 1.20528 1.20681 0.94142 0.92771 0.87061 0.73122 0.80782 0.83208 0.83660 0.86711 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 10.80 113.37 1.22 2.46 16 2 O -0.34 -15.12 9.55 -93.00 -0.89 -16.01 16 3 C 0.05 2.32 5.70 22.52 0.13 2.45 16 4 C 0.03 1.14 7.32 22.53 0.16 1.31 16 5 F -0.14 -5.22 16.95 44.97 0.76 -4.46 16 6 C 0.07 2.20 6.71 22.51 0.15 2.35 16 7 O -0.49 -12.28 13.37 -93.03 -1.24 -13.53 16 8 C -0.11 -3.04 9.98 22.38 0.22 -2.81 16 9 C -0.09 -3.23 9.26 22.25 0.21 -3.02 16 10 C -0.06 -2.37 5.01 -19.76 -0.10 -2.47 16 11 C 0.25 12.38 2.66 43.42 0.12 12.50 16 12 H 0.02 1.17 6.41 -2.38 -0.02 1.15 16 13 N -0.84 -38.16 8.78 -174.95 -1.54 -39.70 16 14 C -0.55 -29.49 8.71 25.60 0.22 -29.27 16 15 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 16 C 0.03 1.36 5.38 84.66 0.46 1.81 16 17 N -0.91 -49.65 11.53 21.45 0.25 -49.41 16 18 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H 0.04 1.51 7.16 -2.39 -0.02 1.49 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 25 H 0.41 6.05 9.06 -74.06 -0.67 5.38 16 26 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 27 H 0.15 4.73 6.28 -2.92 -0.02 4.71 16 28 H 0.35 17.17 7.07 -89.69 -0.63 16.54 16 29 H 0.32 13.32 7.20 -89.69 -0.65 12.68 16 30 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -63.03 266.14 1.42 -61.60 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.74 Total: 31.42 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 2.79 Total: -14.71 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.29 Total: -89.10 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -2.13 Total: -29.53 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.76 Total: -4.46 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -63.03 1.42 -61.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220365.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.503 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds