Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35952 * 117.00306 * 2 1 4 4 C 1.38603 * 120.03116 * 359.97438 * 3 2 1 5 5 C 1.38643 * 119.91266 * 179.74850 * 4 3 2 6 6 O 1.35942 * 120.00297 * 180.29587 * 5 4 3 7 7 C 1.38724 * 119.98258 * 0.54601 * 5 4 3 8 8 C 1.50700 * 119.96518 * 179.72352 * 7 5 4 9 9 H 1.09004 * 109.47210 * 324.73031 * 8 7 5 10 10 N 1.46899 * 109.47483 * 204.72700 * 8 7 5 11 11 C 1.50702 * 109.46869 * 84.72738 * 8 7 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38216 * 120.07225 * 359.45355 * 7 5 4 20 20 C 1.38331 * 120.07875 * 0.27290 * 19 7 5 21 21 F 1.35098 * 119.98905 * 180.02562 * 20 19 7 22 22 H 1.08999 * 109.47460 * 59.99937 * 1 2 3 23 23 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46894 * 300.00330 * 1 2 3 25 25 H 1.08002 * 120.04546 * 0.05022 * 4 3 2 26 26 H 0.96699 * 113.99844 * 270.24666 * 6 5 4 27 27 H 1.00903 * 111.00048 * 300.00270 * 10 8 7 28 28 H 1.00904 * 110.99882 * 63.95460 * 10 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 30 30 H 1.07998 * 119.95862 * 180.29030 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2921 2.3742 -0.0005 5 6 1.9241 3.6082 0.0047 6 8 1.1862 4.7498 0.0103 7 6 3.3096 3.6774 -0.0009 8 6 3.9962 5.0190 -0.0015 9 1 3.4123 5.7257 -0.5913 10 7 5.3367 4.8828 -0.5866 11 6 4.1147 5.5232 1.4138 12 1 3.7315 4.9312 2.2318 13 6 4.7178 6.7374 1.6648 14 7 5.1847 7.4581 0.6687 15 14 4.8715 7.3588 3.4196 16 1 6.1519 6.8834 4.0027 17 1 4.8472 8.8436 3.4229 18 1 3.7378 6.8434 4.2285 19 6 4.0611 2.5174 -0.0004 20 6 3.4334 1.2847 0.0001 21 9 4.1697 0.1520 0.0011 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2135 2.3192 -0.0001 26 1 0.9691 5.0821 -0.8715 27 1 5.8979 4.2324 -0.0574 28 1 5.2819 4.6078 -1.5559 29 1 5.6087 8.3125 0.8453 30 1 5.1396 2.5735 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260255024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = -116.853128 kcal Electronic energy + Delta-G solvation = -17285.402652 eV Core-core repulsion = 14188.102201 eV Total energy + Delta-G solvation = -3097.300452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.83812 -41.29857 -39.54928 -37.35403 -35.85721 -33.55043 -30.83527 -30.34153 -28.59811 -27.49982 -24.58681 -23.56716 -21.88654 -19.90550 -18.66955 -18.34500 -18.10175 -17.49829 -17.12642 -16.54476 -16.06250 -15.99533 -15.81870 -15.41537 -15.11361 -14.77767 -14.30315 -14.03372 -13.23041 -13.00240 -12.95207 -12.72617 -12.57978 -12.38068 -12.03829 -11.85769 -11.48166 -11.14056 -10.53115 -9.84374 -9.07466 -8.87954 -7.96200 -6.15615 0.01504 0.23557 1.42903 1.44527 1.53662 2.15900 2.39176 2.54574 3.17789 3.27245 3.28424 3.72490 4.02390 4.15679 4.33429 4.38040 4.42090 4.55058 4.69934 4.82154 4.89199 5.04898 5.27625 5.56150 5.61362 5.77395 6.18967 6.23825 6.65870 6.90664 7.08945 7.26939 7.54972 9.06523 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.007045 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.239969 B = 3973.481587 C = 4234.634823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.094 3.906 4 C -0.200 4.200 5 C 0.136 3.864 6 O -0.494 6.494 7 C -0.131 4.131 8 C 0.273 3.727 9 H 0.027 0.973 10 N -0.822 5.822 11 C -0.534 4.534 12 H 0.037 0.963 13 C 0.039 3.961 14 N -0.877 5.877 15 Si 0.942 3.058 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.276 1.276 19 C -0.111 4.111 20 C 0.042 3.958 21 F -0.143 7.143 22 H 0.071 0.929 23 H 0.126 0.874 24 H 0.064 0.936 25 H 0.169 0.831 26 H 0.404 0.596 27 H 0.323 0.677 28 H 0.315 0.685 29 H 0.255 0.745 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 -11.554 -3.856 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.048 3.952 4 C -0.219 4.219 5 C 0.090 3.910 6 O -0.306 6.306 7 C -0.134 4.134 8 C 0.163 3.837 9 H 0.045 0.955 10 N -0.350 5.350 11 C -0.573 4.573 12 H 0.055 0.945 13 C -0.165 4.165 14 N -0.513 5.513 15 Si 0.768 3.232 16 H -0.204 1.204 17 H -0.207 1.207 18 H -0.201 1.201 19 C -0.130 4.130 20 C 0.022 3.978 21 F -0.121 7.121 22 H 0.090 0.910 23 H 0.144 0.856 24 H 0.082 0.918 25 H 0.187 0.813 26 H 0.263 0.737 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.161 -10.872 -3.160 14.564 hybrid contribution -0.075 -0.451 0.317 0.556 sum -9.236 -11.322 -2.843 14.886 Atomic orbital electron populations 1.23449 0.75739 1.06030 1.02616 1.86098 1.24104 1.25068 1.88920 1.18649 0.90158 0.85906 1.00487 1.21464 1.01747 0.89858 1.08825 1.18165 0.88743 0.85940 0.98166 1.84842 1.71775 1.39389 1.34571 1.21683 0.94344 0.98282 0.99094 1.17648 0.85532 0.86079 0.94455 0.95477 1.58976 1.15710 1.56259 1.04061 1.20992 1.40127 1.04205 0.91943 0.94503 1.25561 0.94618 0.96694 0.99604 1.70196 1.37433 1.12076 1.31633 0.85841 0.78197 0.77481 0.81664 1.20365 1.20695 1.20125 1.20719 1.01248 0.89332 1.01737 1.17030 0.86644 0.82447 1.11692 1.91431 1.76862 1.49148 1.94694 0.91040 0.85624 0.91773 0.81347 0.73692 0.86373 0.87350 0.93557 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.08 10.36 -93.01 -0.96 -10.04 16 3 C 0.09 2.99 6.69 22.52 0.15 3.14 16 4 C -0.20 -5.94 8.97 22.45 0.20 -5.74 16 5 C 0.14 4.89 6.67 22.48 0.15 5.04 16 6 O -0.49 -17.18 12.64 -92.89 -1.17 -18.36 16 7 C -0.13 -5.32 5.00 -19.75 -0.10 -5.42 16 8 C 0.27 13.19 2.57 43.42 0.11 13.30 16 9 H 0.03 1.44 7.69 -2.38 -0.02 1.42 16 10 N -0.82 -37.45 8.12 -174.95 -1.42 -38.87 16 11 C -0.53 -29.53 8.71 25.60 0.22 -29.31 16 12 H 0.04 2.10 7.74 -2.91 -0.02 2.08 16 13 C 0.04 2.17 5.39 84.66 0.46 2.62 16 14 N -0.88 -50.86 12.76 21.45 0.27 -50.59 16 15 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.11 -4.17 9.24 22.29 0.21 -3.96 16 20 C 0.04 1.48 7.31 22.45 0.16 1.64 16 21 F -0.14 -5.06 17.11 44.97 0.77 -4.29 16 22 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 23 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 25 H 0.17 3.79 6.30 -2.91 -0.02 3.77 16 26 H 0.40 9.91 9.06 -74.06 -0.67 9.24 16 27 H 0.32 14.08 7.20 -89.69 -0.65 13.44 16 28 H 0.31 12.53 9.06 -89.69 -0.81 11.72 16 29 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.14 5.12 6.28 -2.91 -0.02 5.10 16 Total: -1.00 -67.42 267.31 1.27 -66.15 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.91 Total: 26.87 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 2.68 Total: -17.32 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.15 Total: -89.46 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -2.14 Total: -28.40 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.42 1.27 -66.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260255024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.703 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds