Wall clock time and date at job start Mon Mar 30 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38028 * 120.06031 * 2 1 4 4 C 1.38309 * 120.12410 * 180.02562 * 3 2 1 5 5 C 1.38353 * 120.25568 * 0.02562 * 4 3 2 6 6 C 1.37985 * 120.12208 * 359.74387 * 5 4 3 7 7 C 1.39357 * 120.06647 * 180.02562 * 2 1 3 8 8 C 1.48309 * 120.12623 * 359.95464 * 7 2 1 9 9 C 1.40296 * 120.64745 * 132.44243 * 8 7 2 10 10 N 1.32362 * 119.29810 * 180.02562 * 9 8 7 11 11 N 1.28692 * 120.62572 * 359.97438 * 10 9 8 12 12 C 1.33658 * 121.39011 * 0.02562 * 11 10 9 13 13 C 1.41560 * 119.66463 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99729 * 172.69091 * 13 12 11 15 15 C 1.40073 * 120.00103 * 352.68379 * 13 12 11 16 16 N 1.30679 * 120.00390 * 352.86000 * 15 13 12 17 17 Si 1.86805 * 119.99803 * 172.86397 * 15 13 12 18 18 H 1.48505 * 109.46906 * 94.77231 * 17 15 13 19 19 H 1.48501 * 109.46908 * 214.76594 * 17 15 13 20 20 H 1.48499 * 109.47140 * 334.76979 * 17 15 13 21 21 N 1.32846 * 120.64287 * 312.43807 * 8 7 2 22 22 H 1.08997 * 109.46949 * 264.63937 * 1 2 3 23 23 H 1.08995 * 109.47010 * 24.64538 * 1 2 3 24 24 H 1.09002 * 109.46477 * 144.64545 * 1 2 3 25 25 H 1.07996 * 119.93864 * 0.02562 * 3 2 1 26 26 H 1.08007 * 119.87144 * 179.97438 * 4 3 2 27 27 H 1.07998 * 119.93663 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.06218 * 180.28375 * 6 5 4 29 29 H 1.08001 * 120.35082 * 0.02562 * 9 8 7 30 30 H 0.97000 * 120.00586 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1946 0.0000 4 6 3.5815 1.1962 -0.0005 5 6 4.2800 0.0019 -0.0016 6 6 3.5993 -1.1984 0.0032 7 6 2.2052 -1.2061 -0.0005 8 6 1.4680 -2.4929 -0.0001 9 6 1.8187 -3.5183 -0.8911 10 7 1.1423 -4.6559 -0.8680 11 7 0.1727 -4.8254 -0.0390 12 6 -0.1835 -3.8664 0.8212 13 6 -1.2555 -4.0923 1.7177 14 1 -1.4725 -3.3717 2.4923 15 6 -2.0348 -5.2503 1.6000 16 7 -1.8644 -6.0520 0.5822 17 14 -3.3179 -5.6485 2.8980 18 1 -4.6408 -5.1350 2.4602 19 1 -3.3946 -7.1199 3.0831 20 1 -2.9382 -5.0071 4.1824 21 7 0.4628 -2.6971 0.8441 22 1 -0.3633 -0.0960 1.0232 23 1 -0.3633 0.9340 -0.4285 24 1 -0.3632 -0.8382 -0.5947 25 1 1.6584 2.1299 0.0004 26 1 4.1184 2.1333 -0.0010 27 1 5.3599 0.0091 -0.0016 28 1 4.1455 -2.1301 0.0070 29 1 2.6319 -3.3810 -1.5884 30 1 -2.4043 -6.8537 0.5005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:18 Heat of formation + Delta-G solvation = 80.767024 kcal Electronic energy + Delta-G solvation = -16134.857151 eV Core-core repulsion = 13509.188128 eV Total energy + Delta-G solvation = -2625.669023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88966 -38.63270 -34.16363 -33.60019 -32.18889 -31.66679 -29.49871 -26.82852 -26.56864 -23.98681 -22.86790 -21.49326 -20.64487 -18.02405 -16.85064 -16.20822 -15.23552 -14.96194 -14.89440 -14.70257 -13.75847 -13.59997 -13.19887 -12.99971 -12.78647 -11.90404 -11.70105 -11.62421 -11.40605 -11.19207 -10.90656 -10.82999 -10.48500 -10.26483 -10.03029 -9.75273 -9.51136 -8.75390 -8.46916 -8.04679 -7.44756 -6.83802 -4.94899 1.34745 1.64796 2.43743 2.51096 2.98654 3.01807 3.05763 3.77349 4.02781 4.48399 4.86300 5.11364 5.14222 5.25975 5.54486 5.57119 5.72066 5.82729 5.90809 5.95859 6.06741 6.17769 6.21846 6.25653 6.61571 6.68670 6.71890 6.80421 6.94107 7.06169 7.17511 7.30212 7.92789 8.25051 8.33727 8.87007 10.00322 10.54264 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.006376 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.888555 B = 4390.241768 C = 4866.605693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.133 4.133 6 C -0.095 4.095 7 C -0.025 4.025 8 C 0.186 3.814 9 C -0.158 4.158 10 N -0.189 5.189 11 N -0.287 5.287 12 C 0.319 3.681 13 C -0.385 4.385 14 H 0.098 0.902 15 C 0.064 3.936 16 N -0.707 5.707 17 Si 0.924 3.076 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.257 1.257 21 N -0.522 5.522 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 9.419 0.154 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.051 4.051 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.114 4.114 7 C -0.027 4.027 8 C 0.025 3.975 9 C -0.326 4.326 10 N -0.043 5.043 11 N -0.149 5.149 12 C 0.082 3.918 13 C -0.422 4.422 14 H 0.116 0.884 15 C -0.165 4.165 16 N -0.328 5.328 17 Si 0.747 3.253 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.181 1.181 21 N -0.245 5.245 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.023 8.281 0.125 9.207 hybrid contribution 0.052 0.584 0.425 0.724 sum 4.074 8.865 0.550 9.772 Atomic orbital electron populations 1.20730 0.90621 1.01327 1.03470 1.20012 0.96530 0.91829 0.96681 1.20932 0.94183 0.97151 1.02378 1.21105 0.94204 0.97805 1.00579 1.20957 0.99532 0.92276 1.02293 1.21164 0.92896 0.98344 0.99041 1.18500 0.92510 0.91087 1.00607 1.20462 0.92193 0.92536 0.92269 1.23941 1.07164 0.95162 1.06323 1.73390 1.00025 1.17702 1.13177 1.74697 1.08788 1.25898 1.05485 1.21277 0.93205 0.84612 0.92701 1.19341 1.07725 1.04217 1.10893 0.88446 1.26152 0.98384 0.95360 0.96563 1.69996 1.30237 1.08421 1.24159 0.86033 0.79809 0.78665 0.80828 1.19130 1.19641 1.18097 1.69392 1.08199 1.23328 1.23622 0.90057 0.92732 0.91584 0.86177 0.86412 0.86170 0.85814 0.84187 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 8.76 36.01 0.32 -1.50 16 2 C -0.05 -0.85 5.90 -104.28 -0.62 -1.47 16 3 C -0.13 -1.81 9.67 -39.63 -0.38 -2.19 16 4 C -0.12 -1.51 10.04 -39.51 -0.40 -1.90 16 5 C -0.13 -1.76 10.03 -39.63 -0.40 -2.16 16 6 C -0.10 -1.53 9.51 -39.24 -0.37 -1.90 16 7 C -0.03 -0.49 5.65 -104.90 -0.59 -1.08 16 8 C 0.19 4.31 5.48 -82.51 -0.45 3.85 16 9 C -0.16 -3.72 10.84 -16.55 -0.18 -3.90 16 10 N -0.19 -5.09 11.62 30.97 0.36 -4.73 16 11 N -0.29 -8.34 9.17 30.83 0.28 -8.06 16 12 C 0.32 8.98 7.40 -157.99 -1.17 7.81 16 13 C -0.39 -10.25 9.38 -37.63 -0.35 -10.61 16 14 H 0.10 2.45 7.86 -52.49 -0.41 2.03 16 15 C 0.06 1.57 5.47 -17.35 -0.09 1.48 16 16 N -0.71 -18.51 11.56 55.55 0.64 -17.87 16 17 Si 0.92 17.93 29.57 -169.99 -5.03 12.91 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 N -0.52 -13.42 8.94 -9.05 -0.08 -13.51 16 22 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 23 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 24 H 0.07 1.33 6.99 -51.93 -0.36 0.96 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.87 8.02 -52.48 -0.42 1.45 16 29 H 0.14 2.80 8.04 -52.49 -0.42 2.38 16 30 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 269.88 15.07 4.07 4.07 Total: -1.00 -30.36 269.88 -7.31 -37.67 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.86 Total: 3.10 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -4.69 Total: -13.57 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.20 Total: -44.17 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.36 -7.31 -37.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.440 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds