Wall clock time and date at job start Mon Mar 30 2020 03:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38028 * 120.06031 * 2 1 4 4 C 1.38309 * 120.12410 * 180.02562 * 3 2 1 5 5 C 1.38353 * 120.25568 * 0.02562 * 4 3 2 6 6 C 1.37985 * 120.12208 * 359.74387 * 5 4 3 7 7 C 1.39357 * 120.06647 * 180.02562 * 2 1 3 8 8 C 1.48309 * 120.12623 * 359.95464 * 7 2 1 9 9 C 1.40296 * 120.64745 * 132.44243 * 8 7 2 10 10 N 1.32362 * 119.29810 * 180.02562 * 9 8 7 11 11 N 1.28692 * 120.62572 * 359.97438 * 10 9 8 12 12 C 1.33658 * 121.39011 * 0.02562 * 11 10 9 13 13 C 1.41560 * 119.66463 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99729 * 172.69091 * 13 12 11 15 15 C 1.40073 * 120.00103 * 352.68379 * 13 12 11 16 16 N 1.30679 * 120.00390 * 352.86000 * 15 13 12 17 17 Si 1.86805 * 119.99803 * 172.86397 * 15 13 12 18 18 H 1.48505 * 109.46906 * 94.77231 * 17 15 13 19 19 H 1.48501 * 109.46908 * 214.76594 * 17 15 13 20 20 H 1.48499 * 109.47140 * 334.76979 * 17 15 13 21 21 N 1.32846 * 120.64287 * 312.43807 * 8 7 2 22 22 H 1.08997 * 109.46949 * 264.63937 * 1 2 3 23 23 H 1.08995 * 109.47010 * 24.64538 * 1 2 3 24 24 H 1.09002 * 109.46477 * 144.64545 * 1 2 3 25 25 H 1.07996 * 119.93864 * 0.02562 * 3 2 1 26 26 H 1.08007 * 119.87144 * 179.97438 * 4 3 2 27 27 H 1.07998 * 119.93663 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.06218 * 180.28375 * 6 5 4 29 29 H 1.08001 * 120.35082 * 0.02562 * 9 8 7 30 30 H 0.97000 * 120.00586 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1946 0.0000 4 6 3.5815 1.1962 -0.0005 5 6 4.2800 0.0019 -0.0016 6 6 3.5993 -1.1984 0.0032 7 6 2.2052 -1.2061 -0.0005 8 6 1.4680 -2.4929 -0.0001 9 6 1.8187 -3.5183 -0.8911 10 7 1.1423 -4.6559 -0.8680 11 7 0.1727 -4.8254 -0.0390 12 6 -0.1835 -3.8664 0.8212 13 6 -1.2555 -4.0923 1.7177 14 1 -1.4725 -3.3717 2.4923 15 6 -2.0348 -5.2503 1.6000 16 7 -1.8644 -6.0520 0.5822 17 14 -3.3179 -5.6485 2.8980 18 1 -4.6408 -5.1350 2.4602 19 1 -3.3946 -7.1199 3.0831 20 1 -2.9382 -5.0071 4.1824 21 7 0.4628 -2.6971 0.8441 22 1 -0.3633 -0.0960 1.0232 23 1 -0.3633 0.9340 -0.4285 24 1 -0.3632 -0.8382 -0.5947 25 1 1.6584 2.1299 0.0004 26 1 4.1184 2.1333 -0.0010 27 1 5.3599 0.0091 -0.0016 28 1 4.1455 -2.1301 0.0070 29 1 2.6319 -3.3810 -1.5884 30 1 -2.4043 -6.8537 0.5005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:17 Heat of formation + Delta-G solvation = 62.187988 kcal Electronic energy + Delta-G solvation = -16135.662798 eV Core-core repulsion = 13509.188128 eV Total energy + Delta-G solvation = -2626.474670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69435 -39.98632 -36.06472 -35.35184 -33.53826 -33.37050 -31.02620 -28.73960 -27.95419 -25.63862 -24.71631 -22.89501 -21.98147 -19.83519 -18.74492 -17.59554 -16.94896 -16.60326 -16.33439 -16.18416 -15.41540 -15.20391 -14.61738 -14.39138 -13.97856 -13.35429 -13.25069 -13.15215 -12.99704 -12.94636 -12.30897 -12.17930 -12.11842 -11.95426 -11.84759 -11.55867 -11.37401 -10.50370 -9.71550 -9.56815 -9.31188 -8.70221 -6.97836 -0.08849 0.49516 0.54761 0.81214 1.37597 1.48580 1.56753 2.14504 2.58598 2.85075 3.29147 3.56970 3.88380 3.93255 4.00523 4.04735 4.21212 4.35629 4.45684 4.63944 4.75531 4.79825 4.88475 4.91781 5.07355 5.09072 5.30971 5.33850 5.58048 5.60209 5.72220 5.93498 6.10198 6.28359 6.41350 6.90969 8.18395 8.54149 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.006376 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.888555 B = 4390.241768 C = 4866.605693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.068 4.068 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.124 4.124 6 C -0.102 4.102 7 C -0.066 4.066 8 C 0.193 3.807 9 C -0.155 4.155 10 N -0.219 5.219 11 N -0.335 5.335 12 C 0.291 3.709 13 C -0.413 4.413 14 H 0.101 0.899 15 C 0.020 3.980 16 N -0.748 5.748 17 Si 1.009 2.991 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.252 1.252 21 N -0.536 5.536 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.025 0.975 25 H 0.151 0.849 26 H 0.162 0.838 27 H 0.158 0.842 28 H 0.126 0.874 29 H 0.175 0.825 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 12.045 0.789 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.119 4.119 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.067 4.067 8 C 0.032 3.968 9 C -0.325 4.325 10 N -0.070 5.070 11 N -0.195 5.195 12 C 0.053 3.947 13 C -0.450 4.450 14 H 0.119 0.881 15 C -0.204 4.204 16 N -0.370 5.370 17 Si 0.826 3.174 18 H -0.179 1.179 19 H -0.185 1.185 20 H -0.175 1.175 21 N -0.260 5.260 22 H 0.083 0.917 23 H 0.106 0.894 24 H 0.044 0.956 25 H 0.169 0.831 26 H 0.180 0.820 27 H 0.175 0.825 28 H 0.144 0.856 29 H 0.192 0.808 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.271 10.884 0.738 12.116 hybrid contribution -0.125 -0.020 0.139 0.188 sum 5.147 10.864 0.877 12.054 Atomic orbital electron populations 1.20626 0.91550 1.01317 1.01946 1.20119 0.96202 0.92653 0.97997 1.21277 0.95193 0.96801 1.00934 1.21651 0.93673 0.99377 0.97245 1.21392 1.01391 0.91182 1.00158 1.21315 0.91577 1.00086 0.99144 1.18521 0.93740 0.89603 1.04885 1.21184 0.90983 0.94219 0.90453 1.24511 1.07107 0.94437 1.06479 1.73233 1.00556 1.19553 1.13632 1.74621 1.10542 1.27083 1.07247 1.21727 0.94252 0.85430 0.93279 1.19753 1.08326 1.05663 1.11226 0.88058 1.27256 1.00166 0.94206 0.98766 1.70081 1.31563 1.09108 1.26206 0.84805 0.76493 0.78783 0.77275 1.17863 1.18525 1.17527 1.69463 1.09373 1.22536 1.24650 0.91684 0.89358 0.95592 0.83148 0.82044 0.82473 0.85580 0.80839 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.42 8.76 71.24 0.62 -2.79 16 2 C -0.07 -2.29 5.90 -19.64 -0.12 -2.40 16 3 C -0.12 -3.01 9.67 22.24 0.22 -2.79 16 4 C -0.10 -2.01 10.04 22.31 0.22 -1.79 16 5 C -0.12 -2.71 10.03 22.24 0.22 -2.49 16 6 C -0.10 -3.07 9.51 22.49 0.21 -2.85 16 7 C -0.07 -2.49 5.65 -20.05 -0.11 -2.60 16 8 C 0.19 9.24 5.48 42.17 0.23 9.47 16 9 C -0.15 -7.51 10.84 85.11 0.92 -6.59 16 10 N -0.22 -12.38 11.62 -55.92 -0.65 -13.03 16 11 N -0.34 -20.62 9.17 -56.37 -0.52 -21.14 16 12 C 0.29 17.29 7.40 135.03 1.00 18.29 16 13 C -0.41 -23.08 9.38 23.53 0.22 -22.86 16 14 H 0.10 5.33 7.86 -2.91 -0.02 5.31 16 15 C 0.02 1.04 5.47 85.31 0.47 1.50 16 16 N -0.75 -40.83 11.56 21.84 0.25 -40.57 16 17 Si 1.01 37.18 29.57 68.60 2.03 39.21 16 18 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 20 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 21 N -0.54 -29.05 8.94 -182.54 -1.63 -30.68 16 22 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16 24 H 0.02 1.08 6.99 -2.39 -0.02 1.06 16 25 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 26 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 27 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 28 H 0.13 3.62 8.02 -2.91 -0.02 3.60 16 29 H 0.17 6.96 8.04 -2.91 -0.02 6.94 16 30 H 0.29 14.15 8.29 -92.71 -0.77 13.38 16 Total: -1.00 -71.73 269.88 4.75 -66.98 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.16 Total: 17.14 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.11 Total: -17.91 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -2.55 Total: -105.42 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -71.73 4.75 -66.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.168 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds