Wall clock time and date at job start Mon Mar 30 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38354 * 119.93983 * 2 1 4 4 C 1.38302 * 120.25738 * 180.02562 * 3 2 1 5 5 C 1.38028 * 120.12402 * 359.95793 * 4 3 2 6 6 C 1.39365 * 119.87259 * 0.02562 * 5 4 3 7 7 C 1.48308 * 120.12388 * 179.97438 * 6 5 4 8 8 C 1.40304 * 120.64369 * 180.02562 * 7 6 5 9 9 N 1.32357 * 119.29683 * 179.97438 * 8 7 6 10 10 N 1.28696 * 120.62612 * 0.02562 * 9 8 7 11 11 C 1.33653 * 121.39336 * 359.97438 * 10 9 8 12 12 C 1.41559 * 119.67002 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99606 * 180.02562 * 12 11 10 14 14 C 1.40074 * 120.00165 * 0.02562 * 12 11 10 15 15 N 1.30684 * 119.99868 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00165 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47405 * 89.99637 * 16 14 12 18 18 H 1.48500 * 109.47529 * 210.00063 * 16 14 12 19 19 H 1.48503 * 109.47040 * 329.99976 * 16 14 12 20 20 N 1.32848 * 120.64718 * 359.72792 * 7 6 5 21 21 C 1.37985 * 119.93744 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47348 * 270.02415 * 1 2 3 23 23 H 1.09008 * 109.46938 * 30.01953 * 1 2 3 24 24 H 1.08991 * 109.47409 * 150.02171 * 1 2 3 25 25 H 1.08005 * 119.86951 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.94258 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.06362 * 180.29931 * 5 4 3 28 28 H 1.07999 * 120.34709 * 359.95871 * 8 7 6 29 29 H 0.96999 * 120.00239 * 179.97438 * 15 14 12 30 30 H 1.08001 * 120.06070 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1989 0.0000 4 6 3.5805 1.2066 -0.0005 5 6 4.2798 0.0166 -0.0002 6 6 3.5896 -1.1942 0.0001 7 6 4.3354 -2.4761 -0.0001 8 6 3.6516 -3.7012 -0.0003 9 7 4.3439 -4.8293 -0.0010 10 7 5.6307 -4.8088 -0.0010 11 6 6.3087 -3.6570 -0.0008 12 6 7.7241 -3.6771 -0.0013 13 1 8.2773 -2.7495 -0.0008 14 6 8.4073 -4.9000 -0.0026 15 7 7.7379 -6.0224 -0.0028 16 14 10.2750 -4.9265 -0.0026 17 1 10.7700 -4.9349 1.3974 18 1 10.7529 -6.1451 -0.7039 19 1 10.7871 -3.7203 -0.7014 20 7 5.6638 -2.4867 -0.0060 21 6 2.1956 -1.1957 0.0005 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6543 2.1325 -0.0004 26 1 4.1143 2.1454 -0.0010 27 1 5.3598 0.0237 0.0043 28 1 2.5719 -3.7235 0.0004 29 1 8.2109 -6.8692 -0.0041 30 1 1.6555 -2.1310 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:19 Heat of formation + Delta-G solvation = 60.495876 kcal Electronic energy + Delta-G solvation = -15810.760588 eV Core-core repulsion = 13184.212542 eV Total energy + Delta-G solvation = -2626.548046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66532 -40.01988 -36.09401 -35.44599 -33.69054 -33.22617 -31.01665 -28.81390 -27.66442 -25.91357 -24.78737 -22.86767 -21.89540 -19.75245 -18.71375 -17.75257 -17.03477 -16.59184 -16.23715 -15.82034 -15.79792 -15.11396 -14.55599 -14.37629 -13.96107 -13.31955 -13.20400 -13.16761 -12.98620 -12.95651 -12.40345 -12.16807 -12.05518 -11.99660 -11.94441 -11.56260 -11.39063 -10.59072 -9.67240 -9.49331 -9.36880 -8.66298 -7.01605 -0.31077 0.47839 0.53430 1.01253 1.37448 1.50014 1.56409 2.14465 2.57568 2.90749 3.22666 3.62537 3.74866 3.87458 4.02498 4.09410 4.17916 4.38984 4.49362 4.59468 4.78309 4.87094 4.93666 4.99013 5.06529 5.10728 5.32218 5.37481 5.56604 5.63440 5.66876 5.92585 6.08509 6.26985 6.40115 6.89739 8.18729 8.53578 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.044041 B = 0.005558 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.619376 B = 5036.716149 C = 5657.190767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.121 4.121 5 C -0.103 4.103 6 C -0.064 4.064 7 C 0.186 3.814 8 C -0.156 4.156 9 N -0.219 5.219 10 N -0.333 5.333 11 C 0.288 3.712 12 C -0.412 4.412 13 H 0.102 0.898 14 C 0.016 3.984 15 N -0.744 5.744 16 Si 1.012 2.988 17 H -0.256 1.256 18 H -0.260 1.260 19 H -0.251 1.251 20 N -0.551 5.551 21 C -0.101 4.101 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.160 0.840 26 H 0.151 0.849 27 H 0.112 0.888 28 H 0.182 0.818 29 H 0.293 0.707 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 12.064 0.027 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.139 4.139 5 C -0.123 4.123 6 C -0.065 4.065 7 C 0.026 3.974 8 C -0.327 4.327 9 N -0.070 5.070 10 N -0.193 5.193 11 C 0.050 3.950 12 C -0.448 4.448 13 H 0.120 0.880 14 C -0.208 4.208 15 N -0.366 5.366 16 Si 0.829 3.171 17 H -0.180 1.180 18 H -0.184 1.184 19 H -0.174 1.174 20 N -0.275 5.275 21 C -0.120 4.120 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.178 0.822 26 H 0.169 0.831 27 H 0.130 0.870 28 H 0.198 0.802 29 H 0.104 0.896 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.544 10.865 0.014 13.228 hybrid contribution 0.405 0.182 0.021 0.445 sum -7.139 11.047 0.035 13.153 Atomic orbital electron populations 1.20838 0.88283 1.04034 1.03415 1.20212 0.97958 0.92028 0.99158 1.21567 0.93768 0.98725 0.98077 1.21392 0.95060 0.97528 0.99933 1.21379 1.00356 0.92215 0.98336 1.18610 0.93607 0.90024 1.04300 1.21280 0.90905 0.94732 0.90507 1.24555 1.02598 0.90759 1.14778 1.73242 1.03622 1.27183 1.02909 1.74712 0.98156 1.24233 1.22163 1.21754 0.97242 0.84468 0.91508 1.19809 0.87826 0.95743 1.41433 0.87979 1.27307 1.07694 0.93538 0.92251 1.70149 1.40668 0.99616 1.26126 0.84776 0.72525 0.79781 0.80019 1.18033 1.18361 1.17430 1.69260 1.08309 1.30066 1.19865 1.21299 0.91589 0.99705 0.99429 0.90026 0.89504 0.91052 0.82227 0.83132 0.86977 0.80160 0.89580 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 71.23 0.71 -0.90 16 2 C -0.09 -2.13 5.87 -19.90 -0.12 -2.25 16 3 C -0.10 -2.15 9.69 22.31 0.22 -1.93 16 4 C -0.12 -3.05 10.03 22.24 0.22 -2.83 16 5 C -0.10 -3.60 9.59 22.49 0.22 -3.38 16 6 C -0.06 -2.45 5.88 -20.05 -0.12 -2.57 16 7 C 0.19 9.09 6.77 42.17 0.29 9.38 16 8 C -0.16 -7.58 10.76 85.12 0.92 -6.67 16 9 N -0.22 -12.46 11.62 -55.92 -0.65 -13.11 16 10 N -0.33 -20.71 9.06 -56.37 -0.51 -21.22 16 11 C 0.29 17.42 7.43 135.03 1.00 18.43 16 12 C -0.41 -23.29 9.39 23.53 0.22 -23.07 16 13 H 0.10 5.42 7.85 -2.91 -0.02 5.40 16 14 C 0.02 0.84 5.50 85.31 0.47 1.30 16 15 N -0.74 -40.86 11.45 21.84 0.25 -40.61 16 16 Si 1.01 37.36 29.56 68.60 2.03 39.39 16 17 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 20 N -0.55 -30.65 9.64 -182.54 -1.76 -32.41 16 21 C -0.10 -3.02 9.09 22.49 0.20 -2.81 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.09 0.93 8.09 -2.38 -0.02 0.92 16 24 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 25 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 26 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.11 4.32 7.58 -2.91 -0.02 4.30 16 28 H 0.18 6.99 6.31 -2.91 -0.02 6.97 16 29 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 30 H 0.14 3.68 6.27 -2.91 -0.02 3.67 16 Total: -1.00 -73.18 269.40 4.75 -68.43 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.17 Total: 16.83 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.23 Total: -17.29 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.67 Total: -107.35 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -73.18 4.75 -68.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.925 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds