Wall clock time and date at job start Mon Mar 30 2020 04:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46875 * 2 1 4 4 C 1.50699 * 109.47316 * 239.99908 * 2 1 3 5 5 H 1.07994 * 119.99978 * 240.00059 * 4 2 1 6 6 C 1.37882 * 119.99863 * 59.99778 * 4 2 1 7 7 N 1.31519 * 119.99773 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99856 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47258 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46916 * 120.00061 * 8 6 4 11 11 H 1.48501 * 109.47308 * 239.99888 * 8 6 4 12 12 C 1.52999 * 109.47292 * 119.99777 * 2 1 3 13 13 N 1.46508 * 109.47317 * 295.00337 * 12 2 1 14 14 C 1.34915 * 117.65134 * 270.19877 * 13 12 2 15 15 O 1.21227 * 120.01020 * 14.89951 * 14 13 12 16 16 C 1.50734 * 120.04374 * 195.08911 * 14 13 12 17 17 C 1.51661 * 110.01486 * 284.61296 * 16 14 13 18 18 O 1.41661 * 113.18818 * 54.69180 * 17 16 14 19 19 C 1.43503 * 113.33043 * 31.71654 * 18 17 16 20 20 C 1.32422 * 117.64012 * 89.99585 * 13 12 2 21 21 O 1.21222 * 117.80775 * 8.71108 * 20 13 12 22 22 H 1.09003 * 109.47070 * 299.99766 * 1 2 3 23 23 H 1.08992 * 109.47359 * 59.99935 * 1 2 3 24 24 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99418 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47291 * 175.00025 * 12 2 1 27 27 H 1.09001 * 109.47304 * 55.00295 * 12 2 1 28 28 H 1.09002 * 109.36466 * 164.47683 * 16 14 13 29 29 H 1.08998 * 109.35956 * 44.74619 * 16 14 13 30 30 H 1.08998 * 108.73703 * 175.65377 * 17 16 14 31 31 H 1.08998 * 108.73745 * 293.85454 * 17 16 14 32 32 H 1.08998 * 109.32927 * 32.83993 * 19 18 17 33 33 H 1.08994 * 109.32444 * 152.31973 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.6524 0.0354 2.4425 14 6 2.5060 0.9796 2.8899 15 8 3.4074 1.3681 2.1785 16 6 2.3425 1.5490 4.2759 17 6 1.1754 2.5171 4.3049 18 8 -0.0335 1.9476 3.8348 19 6 -0.1437 0.5430 4.1072 20 6 0.4875 -0.2539 3.0018 21 8 -0.1091 -1.2274 2.5946 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 3.1263 -0.7994 1.2056 27 1 1.6055 -1.7198 1.2952 28 1 3.2544 2.0737 4.5610 29 1 2.1570 0.7381 4.9801 30 1 1.0273 2.8564 5.3301 31 1 1.4195 3.3787 3.6835 32 1 0.3594 0.3172 5.0473 33 1 -1.1965 0.2732 4.1905 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:34 Heat of formation + Delta-G solvation = -104.610737 kcal Electronic energy + Delta-G solvation = -18378.897525 eV Core-core repulsion = 15405.588248 eV Total energy + Delta-G solvation = -2973.309277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51956 -38.55640 -38.23674 -35.21759 -33.72359 -31.87876 -30.73680 -28.69378 -25.45986 -24.91735 -24.46251 -22.16785 -20.27525 -18.82337 -17.56659 -16.98926 -16.74840 -16.33077 -15.60887 -15.11626 -14.88810 -14.41485 -14.25574 -13.86016 -13.22326 -12.84596 -12.66624 -12.56651 -12.14080 -11.58664 -11.26279 -11.08071 -10.88833 -10.67941 -10.58768 -10.23912 -10.17205 -9.93069 -9.66755 -9.41217 -8.78332 -8.70024 -8.24552 -5.92890 -3.99977 1.79637 2.81221 3.05311 3.34350 3.41486 3.45834 3.67960 3.99974 4.42056 4.48755 4.59176 4.78890 4.80333 5.14328 5.33007 5.38083 5.46116 5.55612 6.00992 6.11196 6.40452 6.68679 6.72174 7.03707 7.23195 7.36452 7.49352 7.78449 7.86662 8.06135 8.07477 8.24199 8.46841 9.02491 9.63819 11.13402 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.007259 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.124254 B = 3856.546526 C = 4061.325249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 H 0.031 0.969 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.098 3.902 13 N -0.557 5.557 14 C 0.519 3.481 15 O -0.476 6.476 16 C -0.184 4.184 17 C 0.056 3.944 18 O -0.356 6.356 19 C 0.041 3.959 20 C 0.495 3.505 21 O -0.496 6.496 22 H 0.000 1.000 23 H 0.079 0.921 24 H 0.030 0.970 25 H 0.259 0.741 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 1.929 16.988 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.018 3.982 3 H 0.050 0.950 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.022 4.022 13 N -0.298 5.298 14 C 0.308 3.692 15 O -0.347 6.347 16 C -0.224 4.224 17 C -0.021 4.021 18 O -0.274 6.274 19 C -0.039 4.039 20 C 0.283 3.717 21 O -0.370 6.370 22 H 0.019 0.981 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.015 1.862 16.178 16.285 hybrid contribution 0.531 -0.515 -0.741 1.047 sum 0.546 1.347 15.437 15.505 Atomic orbital electron populations 1.21767 0.98122 0.99188 0.99452 1.18927 0.93150 0.96289 0.89859 0.95044 1.21031 1.31286 1.12362 0.90285 0.92519 1.24943 0.95048 0.94983 0.98978 1.69925 1.36676 1.22887 1.23143 0.86501 0.78581 0.79645 0.83043 1.19761 1.21027 1.21047 1.22353 1.00349 0.96124 0.83338 1.46402 1.18653 1.35249 1.29539 1.20737 0.81585 0.78188 0.88731 1.90777 1.31809 1.54646 1.57461 1.22475 1.03238 1.01783 0.94894 1.22183 0.82825 0.95935 1.01139 1.88181 1.37499 1.20541 1.81167 1.23029 1.03896 0.81326 0.95609 1.20794 0.80951 0.85767 0.84202 1.90757 1.59734 1.26846 1.59619 0.98075 0.90268 0.95111 0.93105 0.90524 0.89474 0.85943 0.88433 0.90983 0.88365 0.89065 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 7.76 37.16 0.29 -3.11 16 2 C 0.04 0.99 2.49 -91.77 -0.23 0.76 16 3 H 0.03 0.95 7.95 -51.92 -0.41 0.53 16 4 C -0.51 -14.77 8.56 -34.44 -0.29 -15.06 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -26.70 11.32 55.43 0.63 -26.07 16 8 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.10 2.20 4.39 -4.04 -0.02 2.18 16 13 N -0.56 -10.40 2.42 -116.13 -0.28 -10.69 16 14 C 0.52 8.72 6.88 -10.91 -0.08 8.64 16 15 O -0.48 -9.90 16.49 5.60 0.09 -9.80 16 16 C -0.18 -1.84 5.41 -28.54 -0.15 -1.99 16 17 C 0.06 0.55 6.56 36.48 0.24 0.79 16 18 O -0.36 -4.60 10.64 -35.19 -0.37 -4.98 16 19 C 0.04 0.47 6.17 35.75 0.22 0.70 16 20 C 0.49 8.43 5.52 -12.28 -0.07 8.36 16 21 O -0.50 -10.02 14.63 5.61 0.08 -9.94 16 22 H 0.00 0.01 6.19 -51.93 -0.32 -0.32 16 23 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 24 H 0.03 0.81 7.97 -51.93 -0.41 0.40 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.08 1.71 7.52 -51.93 -0.39 1.32 16 27 H 0.09 1.97 6.99 -51.93 -0.36 1.61 16 28 H 0.12 0.98 8.13 -51.93 -0.42 0.55 16 29 H 0.10 0.71 6.56 -51.93 -0.34 0.37 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.68 6.44 -51.93 -0.33 0.34 16 33 H 0.13 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 269.67 15.07 4.06 4.06 Total: -1.00 -34.99 269.67 -5.12 -40.10 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.12 Total: -2.75 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.18 Total: 2.96 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.35 Total: -36.76 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.20 Total: -24.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.99 -5.12 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.508 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds