Wall clock time and date at job start Mon Mar 30 2020 04:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46875 * 2 1 4 4 C 1.50699 * 109.47316 * 239.99908 * 2 1 3 5 5 H 1.07994 * 119.99978 * 240.00059 * 4 2 1 6 6 C 1.37882 * 119.99863 * 59.99778 * 4 2 1 7 7 N 1.31519 * 119.99773 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99856 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47258 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46916 * 120.00061 * 8 6 4 11 11 H 1.48501 * 109.47308 * 239.99888 * 8 6 4 12 12 C 1.52999 * 109.47292 * 119.99777 * 2 1 3 13 13 N 1.46508 * 109.47317 * 295.00337 * 12 2 1 14 14 C 1.34915 * 117.65134 * 270.19877 * 13 12 2 15 15 O 1.21227 * 120.01020 * 14.89951 * 14 13 12 16 16 C 1.50734 * 120.04374 * 195.08911 * 14 13 12 17 17 C 1.51661 * 110.01486 * 284.61296 * 16 14 13 18 18 O 1.41661 * 113.18818 * 54.69180 * 17 16 14 19 19 C 1.43503 * 113.33043 * 31.71654 * 18 17 16 20 20 C 1.32422 * 117.64012 * 89.99585 * 13 12 2 21 21 O 1.21222 * 117.80775 * 8.71108 * 20 13 12 22 22 H 1.09003 * 109.47070 * 299.99766 * 1 2 3 23 23 H 1.08992 * 109.47359 * 59.99935 * 1 2 3 24 24 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99418 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47291 * 175.00025 * 12 2 1 27 27 H 1.09001 * 109.47304 * 55.00295 * 12 2 1 28 28 H 1.09002 * 109.36466 * 164.47683 * 16 14 13 29 29 H 1.08998 * 109.35956 * 44.74619 * 16 14 13 30 30 H 1.08998 * 108.73703 * 175.65377 * 17 16 14 31 31 H 1.08998 * 108.73745 * 293.85454 * 17 16 14 32 32 H 1.08998 * 109.32927 * 32.83993 * 19 18 17 33 33 H 1.08994 * 109.32444 * 152.31973 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.6524 0.0354 2.4425 14 6 2.5060 0.9796 2.8899 15 8 3.4074 1.3681 2.1785 16 6 2.3425 1.5490 4.2759 17 6 1.1754 2.5171 4.3049 18 8 -0.0335 1.9476 3.8348 19 6 -0.1437 0.5430 4.1072 20 6 0.4875 -0.2539 3.0018 21 8 -0.1091 -1.2274 2.5946 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 3.1263 -0.7994 1.2056 27 1 1.6055 -1.7198 1.2952 28 1 3.2544 2.0737 4.5610 29 1 2.1570 0.7381 4.9801 30 1 1.0273 2.8564 5.3301 31 1 1.4195 3.3787 3.6835 32 1 0.3594 0.3172 5.0473 33 1 -1.1965 0.2732 4.1905 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:34 Heat of formation + Delta-G solvation = -131.064650 kcal Electronic energy + Delta-G solvation = -18380.044653 eV Core-core repulsion = 15405.588248 eV Total energy + Delta-G solvation = -2974.456404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.83626 -39.95594 -39.25819 -37.00496 -35.55827 -33.22810 -32.35718 -29.91212 -27.51377 -26.76380 -25.70331 -23.24471 -22.17596 -20.22250 -18.88873 -18.32164 -18.09461 -17.98690 -16.85446 -16.59454 -16.39860 -15.85054 -15.60742 -15.20079 -14.88501 -14.62261 -14.38823 -13.73252 -13.28176 -13.17533 -12.98779 -12.89074 -12.59599 -12.31634 -12.19523 -12.01118 -11.82635 -11.70202 -11.49132 -10.94001 -10.64656 -10.54070 -10.32972 -8.16360 -6.32626 0.50288 1.37253 1.38074 1.50120 1.55445 1.79659 2.39258 2.74559 3.00005 3.11210 3.64442 3.71012 3.93164 4.07305 4.20000 4.40633 4.44427 4.48770 4.63319 4.67144 4.70332 4.85595 4.91106 5.04486 5.22557 5.49267 5.77874 5.92263 5.94705 6.07612 6.21973 6.59766 6.72267 6.81053 7.35709 8.89800 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.007259 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.124254 B = 3856.546526 C = 4061.325249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.039 3.961 3 H -0.011 1.011 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.111 3.889 13 N -0.567 5.567 14 C 0.510 3.490 15 O -0.530 6.530 16 C -0.168 4.168 17 C 0.050 3.950 18 O -0.381 6.381 19 C 0.050 3.950 20 C 0.487 3.513 21 O -0.536 6.536 22 H 0.012 0.988 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 1.905 19.237 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.020 3.980 3 H 0.008 0.992 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.204 1.204 12 C -0.011 4.011 13 N -0.308 5.308 14 C 0.302 3.698 15 O -0.404 6.404 16 C -0.207 4.207 17 C -0.026 4.026 18 O -0.299 6.299 19 C -0.029 4.029 20 C 0.278 3.722 21 O -0.412 6.412 22 H 0.031 0.969 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.166 0.834 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.165 0.835 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.024 1.857 18.473 18.566 hybrid contribution 0.525 -0.462 -1.425 1.587 sum 0.548 1.395 17.048 17.113 Atomic orbital electron populations 1.21503 0.98017 0.98298 0.98565 1.18784 0.93058 0.94230 0.91895 0.99246 1.21419 1.31775 1.12781 0.91589 0.92360 1.25863 0.95064 0.95703 1.02350 1.70063 1.37486 1.24168 1.24075 0.85392 0.78247 0.78641 0.78698 1.18772 1.20194 1.20400 1.21777 0.99650 0.95899 0.83757 1.46592 1.20137 1.35602 1.28469 1.22173 0.79878 0.76694 0.91013 1.90752 1.33839 1.56203 1.59577 1.22606 1.04834 1.03031 0.90218 1.22474 0.81458 0.94996 1.03700 1.88173 1.38870 1.20886 1.81990 1.23170 1.04741 0.79983 0.94977 1.22093 0.79685 0.85666 0.84790 1.90736 1.60357 1.28875 1.61260 0.96880 0.93010 0.95751 0.92861 0.91196 0.89924 0.83419 0.84402 0.85689 0.89777 0.83474 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 7.76 71.98 0.56 -5.31 16 2 C 0.04 2.22 2.49 -11.54 -0.03 2.20 16 3 H -0.01 -0.68 7.95 -2.38 -0.02 -0.70 16 4 C -0.54 -32.08 8.56 25.60 0.22 -31.86 16 5 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -56.87 11.32 21.45 0.24 -56.63 16 8 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 9 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 C 0.11 5.16 4.39 86.38 0.38 5.54 16 13 N -0.57 -21.13 2.42 -759.37 -1.84 -22.97 16 14 C 0.51 16.76 6.88 87.65 0.60 17.36 16 15 O -0.53 -22.60 16.49 -2.86 -0.05 -22.65 16 16 C -0.17 -2.68 5.41 29.42 0.16 -2.52 16 17 C 0.05 0.76 6.56 71.54 0.47 1.23 16 18 O -0.38 -8.59 10.64 -148.85 -1.58 -10.17 16 19 C 0.05 0.97 6.17 71.07 0.44 1.41 16 20 C 0.49 15.96 5.52 87.86 0.48 16.45 16 21 O -0.54 -21.55 14.63 -2.85 -0.04 -21.59 16 22 H 0.01 0.64 6.19 -2.39 -0.01 0.62 16 23 H 0.05 3.13 6.07 -2.39 -0.01 3.11 16 24 H 0.02 1.32 7.97 -2.39 -0.02 1.30 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.07 3.28 7.52 -2.39 -0.02 3.26 16 27 H 0.08 3.88 6.99 -2.39 -0.02 3.86 16 28 H 0.15 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.14 1.14 6.56 -2.39 -0.02 1.13 16 30 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.15 1.24 6.44 -2.39 -0.02 1.22 16 33 H 0.15 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -81.70 269.67 3.61 -78.10 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.12 Total: 2.38 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 3.73 Total: 5.46 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.60 Total: -79.60 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -1.67 Total: -54.41 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.70 3.61 -78.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.966 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds