Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35906 * 116.99928 * 2 1 4 4 C 1.38751 * 120.01362 * 0.25340 * 3 2 1 5 5 C 1.38377 * 120.02798 * 180.25840 * 4 3 2 6 6 F 1.35098 * 119.97030 * 179.72487 * 5 4 3 7 7 C 1.38424 * 120.05901 * 359.74203 * 5 4 3 8 8 C 1.38713 * 120.02838 * 0.02562 * 7 5 4 9 9 O 1.35896 * 120.01046 * 179.97438 * 8 7 5 10 10 C 1.38625 * 120.01403 * 179.97438 * 3 2 1 11 11 C 1.50698 * 120.02951 * 0.02562 * 10 3 2 12 12 H 1.08998 * 109.47607 * 14.72896 * 11 10 3 13 13 N 1.46901 * 109.47110 * 134.72477 * 11 10 3 14 14 C 1.50702 * 109.47465 * 254.72101 * 11 10 3 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 11 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 H 1.09001 * 109.47465 * 299.99893 * 1 2 3 23 23 H 1.08999 * 109.47612 * 59.99996 * 1 2 3 24 24 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.98639 * 359.97202 * 4 3 2 26 26 H 1.08004 * 119.98276 * 180.02562 * 7 5 4 27 27 H 0.96696 * 114.00376 * 270.02894 * 9 8 7 28 28 H 1.00908 * 111.00077 * 296.04383 * 13 11 10 29 29 H 1.00905 * 111.00224 * 59.99512 * 13 11 10 30 30 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3748 0.0053 5 6 1.9183 3.6079 -0.0001 6 9 1.1816 4.7403 -0.0005 7 6 3.3006 3.6821 -0.0054 8 6 4.0582 2.5202 -0.0059 9 8 5.4151 2.5935 -0.0116 10 6 3.4302 1.2838 0.0005 11 6 4.2520 0.0206 0.0005 12 1 3.6171 -0.8259 -0.2612 13 7 5.3363 0.1418 -0.9831 14 6 4.8393 -0.1967 1.3713 15 1 4.6373 0.5092 2.1634 16 6 5.6344 -1.2966 1.6141 17 7 5.8800 -2.1564 0.6498 18 14 6.3685 -1.5619 3.3113 19 1 7.1831 -2.8035 3.3096 20 1 7.2301 -0.4050 3.6642 21 1 5.2760 -1.6879 4.3091 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2119 2.3182 0.0090 26 1 3.7894 4.6452 -0.0092 27 1 5.8043 2.6131 -0.8966 28 1 4.9681 0.2237 -1.9190 29 1 5.9394 0.9202 -0.7624 30 1 5.4984 -2.0188 -0.2314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = -116.952269 kcal Electronic energy + Delta-G solvation = -17615.918539 eV Core-core repulsion = 14518.613788 eV Total energy + Delta-G solvation = -3097.304751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.03744 -41.55371 -39.64537 -36.86166 -36.54470 -33.33934 -30.97751 -30.64380 -28.21135 -27.32684 -24.51062 -23.51744 -22.43216 -20.05520 -18.97115 -18.29235 -18.20932 -17.13736 -16.96523 -16.73122 -16.39476 -16.16605 -15.73872 -15.55695 -15.36464 -14.89724 -14.26025 -14.02994 -13.30391 -13.08968 -12.84022 -12.70217 -12.54859 -12.31735 -11.90469 -11.83131 -11.62732 -10.78167 -10.41108 -9.69638 -9.39328 -9.08972 -8.31744 -6.14472 -0.02468 0.14500 1.55457 1.63618 1.82656 2.20040 2.35105 2.67320 2.96529 3.32243 3.38311 3.84332 3.87044 3.98214 4.17895 4.30012 4.34082 4.39128 4.65057 4.81567 4.87465 4.96607 5.08193 5.49144 5.53078 6.00708 6.26787 6.33923 6.66130 6.74465 6.87130 7.14278 7.72686 9.04521 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.008604 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.996204 B = 3253.348784 C = 3700.104443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.158 3.842 4 C -0.247 4.247 5 C 0.136 3.864 6 F -0.133 7.133 7 C -0.216 4.216 8 C 0.166 3.834 9 O -0.485 6.485 10 C -0.173 4.173 11 C 0.262 3.738 12 H 0.012 0.988 13 N -0.840 5.840 14 C -0.599 4.599 15 H 0.024 0.976 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 1.106 2.894 19 H -0.283 1.283 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.167 0.833 26 H 0.159 0.841 27 H 0.401 0.599 28 H 0.314 0.686 29 H 0.338 0.662 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 10.242 -3.812 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.111 3.889 4 C -0.266 4.266 5 C 0.116 3.884 6 F -0.111 7.111 7 C -0.235 4.235 8 C 0.121 3.879 9 O -0.297 6.297 10 C -0.177 4.177 11 C 0.152 3.848 12 H 0.030 0.970 13 N -0.376 5.376 14 C -0.638 4.638 15 H 0.043 0.957 16 C -0.215 4.215 17 N -0.556 5.556 18 Si 0.930 3.070 19 H -0.208 1.208 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.135 0.865 25 H 0.184 0.816 26 H 0.177 0.823 27 H 0.261 0.739 28 H 0.126 0.874 29 H 0.157 0.843 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.514 8.363 -2.101 12.118 hybrid contribution -1.615 2.151 -1.614 3.137 sum -10.130 10.513 -3.715 15.065 Atomic orbital electron populations 1.23441 0.76217 1.05738 1.02610 1.86225 1.23711 1.26130 1.87925 1.18454 0.91103 0.84700 0.94652 1.21240 1.02050 0.90115 1.13217 1.16924 0.88524 0.81617 1.01343 1.91491 1.76855 1.48902 1.93877 1.21309 0.92250 0.99894 1.10072 1.17635 0.83430 0.89897 0.96985 1.84895 1.15291 1.95224 1.34272 1.21137 0.92669 0.98624 1.05284 1.17637 0.87252 0.87925 0.91974 0.97042 1.59283 1.22537 1.52092 1.03692 1.21841 1.35584 1.11177 0.95149 0.95743 1.26849 0.95159 0.92528 1.06984 1.70663 1.43096 1.37200 1.04691 0.83086 0.76156 0.76221 0.71525 1.20833 1.20436 1.20444 0.91466 0.90719 0.86539 0.81587 0.82305 0.73885 0.87415 0.84251 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -12.20 9.33 -92.49 -0.86 -13.06 16 3 C 0.16 5.96 6.66 22.49 0.15 6.11 16 4 C -0.25 -7.48 9.01 22.43 0.20 -7.28 16 5 C 0.14 4.07 7.29 22.35 0.16 4.23 16 6 F -0.13 -3.63 17.26 44.97 0.78 -2.86 16 7 C -0.22 -6.74 9.96 22.43 0.22 -6.51 16 8 C 0.17 6.18 6.48 22.49 0.15 6.32 16 9 O -0.48 -17.39 11.12 -92.38 -1.03 -18.42 16 10 C -0.17 -7.41 4.90 -19.67 -0.10 -7.50 16 11 C 0.26 13.35 2.27 43.42 0.10 13.45 16 12 H 0.01 0.67 7.00 -2.39 -0.02 0.65 16 13 N -0.84 -38.36 7.67 -174.95 -1.34 -39.70 16 14 C -0.60 -34.92 8.54 25.60 0.22 -34.70 16 15 H 0.02 1.47 7.74 -2.91 -0.02 1.45 16 16 C -0.01 -0.72 5.39 84.65 0.46 -0.26 16 17 N -0.92 -57.41 13.50 21.45 0.29 -57.12 16 18 Si 1.11 52.91 29.90 68.60 2.05 54.96 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 23 H 0.07 1.38 7.67 -2.39 -0.02 1.37 16 24 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.17 3.87 6.29 -2.91 -0.02 3.86 16 26 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.40 10.45 7.81 -74.06 -0.58 9.87 16 28 H 0.31 12.38 9.06 -89.69 -0.81 11.56 16 29 H 0.34 14.29 5.21 -89.69 -0.47 13.82 16 30 H 0.28 17.44 6.40 -92.70 -0.59 16.85 16 Total: -1.00 -72.38 261.45 2.09 -70.29 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.47 Total: 30.61 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 2.67 Total: -24.70 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -1.05 Total: -96.81 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.89 Total: -31.48 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.05 Total: 54.96 kcal Total: -72.38 2.09 -70.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.665 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds