Wall clock time and date at job start Mon Mar 30 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48497 * 109.47221 * 240.00446 * 3 2 1 5 5 H 1.48499 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00565 * 3 2 1 7 7 C 1.38885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99724 * 195.79736 * 7 2 1 9 9 N 1.37191 * 120.00502 * 15.79886 * 7 2 1 10 10 C 1.46050 * 118.48241 * 21.67658 * 9 7 2 11 11 C 1.53161 * 109.93105 * 160.39547 * 10 9 7 12 12 C 1.53258 * 108.41363 * 47.73481 * 11 10 9 13 13 C 1.52959 * 109.60640 * 178.89437 * 12 11 10 14 14 C 1.53216 * 109.04969 * 183.01793 * 13 12 11 15 15 C 1.53091 * 109.13524 * 56.73799 * 14 13 12 16 16 O 1.42903 * 109.46020 * 302.29391 * 15 14 13 17 17 C 1.42949 * 114.07411 * 61.23819 * 16 15 14 18 18 O 1.45204 * 108.51597 * 298.72941 * 12 11 10 19 19 C 1.33721 * 118.48819 * 201.70079 * 9 7 2 20 20 O 1.21509 * 118.48398 * 2.19492 * 19 9 7 21 21 H 0.96995 * 119.99949 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.39923 * 280.53449 * 10 9 7 23 23 H 1.09006 * 109.39593 * 40.34600 * 10 9 7 24 24 H 1.08998 * 109.67759 * 167.46692 * 11 10 9 25 25 H 1.09002 * 109.67471 * 287.96759 * 11 10 9 26 26 H 1.09005 * 109.54382 * 302.89263 * 13 12 11 27 27 H 1.08997 * 109.54493 * 63.14837 * 13 12 11 28 28 H 1.09005 * 109.52879 * 296.83317 * 14 13 12 29 29 H 1.09007 * 109.52792 * 176.63423 * 14 13 12 30 30 H 1.09005 * 109.47149 * 182.30088 * 15 14 13 31 31 H 1.09000 * 109.47422 * 62.29511 * 15 14 13 32 32 H 1.08998 * 109.47794 * 179.13197 * 17 16 15 33 33 H 1.09000 * 109.47887 * 59.10665 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1023 1.6965 -1.2125 5 1 1.2837 2.7464 0.0006 6 1 3.1026 1.6964 1.2124 7 6 2.0091 -1.2028 -0.0005 8 1 3.0585 -1.2205 0.2541 9 7 1.3621 -2.3684 -0.3245 10 6 0.1318 -2.2876 -1.1074 11 6 -0.1584 -3.6401 -1.7649 12 6 -0.0099 -4.7360 -0.7039 13 6 -0.3213 -6.0983 -1.3259 14 6 -0.2429 -7.1744 -0.2381 15 6 -1.2069 -6.8136 0.8951 16 8 -0.8744 -5.5227 1.4101 17 6 -0.9760 -4.4681 0.4504 18 8 1.3569 -4.7213 -0.2139 19 6 1.8867 -3.5259 0.0914 20 8 2.8921 -3.4948 0.7731 21 1 -0.4850 0.8400 0.0004 22 1 -0.6969 -2.0183 -0.4526 23 1 0.2439 -1.5274 -1.8805 24 1 -1.1746 -3.6461 -2.1590 25 1 0.5503 -3.8141 -2.5746 26 1 -1.3241 -6.0836 -1.7528 27 1 0.4059 -6.3168 -2.1079 28 1 0.7740 -7.2259 0.1510 29 1 -0.5218 -8.1400 -0.6601 30 1 -1.1258 -7.5542 1.6908 31 1 -2.2278 -6.8006 0.5134 32 1 -0.7222 -3.5199 0.9242 33 1 -1.9955 -4.4219 0.0677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260515454.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:47 Heat of formation + Delta-G solvation = -114.362866 kcal Electronic energy + Delta-G solvation = -18761.675404 eV Core-core repulsion = 15787.943243 eV Total energy + Delta-G solvation = -2973.732161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54117 -38.35259 -35.85644 -35.31969 -33.11046 -32.13053 -30.94773 -28.25459 -25.22923 -24.78896 -23.86690 -22.08804 -20.78572 -18.75166 -17.26864 -16.72161 -16.13171 -15.58104 -15.25262 -15.10057 -14.61865 -14.20197 -14.05569 -13.62583 -13.08815 -12.98018 -12.59022 -12.51681 -11.77044 -11.58544 -11.39305 -11.11268 -10.99874 -10.84167 -10.47095 -10.33652 -10.24877 -10.21727 -9.88452 -9.14637 -8.92233 -8.85457 -7.78168 -6.31014 -3.91323 3.21035 3.25516 3.29229 3.61240 4.09491 4.16873 4.23648 4.70463 4.78076 4.86505 4.96764 5.06361 5.16606 5.31636 5.44888 5.56496 5.65730 5.69379 5.77592 5.85420 5.91898 5.98899 6.13471 6.29996 6.36877 6.73844 7.10997 7.20616 7.44818 7.59069 8.33019 8.63056 9.13702 9.50590 9.90746 10.71967 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042016 B = 0.007876 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.244993 B = 3554.173994 C = 3698.667543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.029 3.971 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.458 5.458 10 C 0.132 3.868 11 C -0.170 4.170 12 C 0.088 3.912 13 C -0.107 4.107 14 C -0.155 4.155 15 C 0.058 3.942 16 O -0.369 6.369 17 C 0.046 3.954 18 O -0.342 6.342 19 C 0.597 3.403 20 O -0.570 6.570 21 H 0.268 0.732 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -8.737 -4.942 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.191 5.191 10 C 0.009 3.991 11 C -0.209 4.209 12 C 0.049 3.951 13 C -0.144 4.144 14 C -0.192 4.192 15 C -0.019 4.019 16 O -0.288 6.288 17 C -0.031 4.031 18 O -0.255 6.255 19 C 0.351 3.649 20 O -0.460 6.460 21 H 0.078 0.922 22 H 0.108 0.892 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.792 -8.814 -4.414 11.971 hybrid contribution 0.032 0.947 -0.488 1.066 sum -6.760 -7.867 -4.902 11.473 Atomic orbital electron populations 1.69970 1.05800 1.27544 1.49615 1.25289 0.95545 0.99687 0.96779 0.85922 0.78881 0.80344 0.79129 1.19992 1.20992 1.19750 1.19582 0.95186 0.82164 1.45928 0.88034 1.42959 1.23909 1.04423 1.47798 1.21457 0.89138 0.92797 0.95750 1.22705 1.03268 0.96634 0.98255 1.22597 0.81822 0.96467 0.94210 1.21589 1.02110 0.92558 0.98180 1.22164 1.02234 0.98211 0.96636 1.22584 0.96538 0.85920 0.96894 1.88047 1.89665 1.15326 1.35715 1.23183 0.97443 0.92030 0.90454 1.86597 1.27751 1.30842 1.80358 1.17796 0.85687 0.79203 0.82177 1.90798 1.27441 1.84862 1.42927 0.92217 0.89200 0.90684 0.89522 0.90699 0.90202 0.90495 0.89989 0.91031 0.89074 0.93577 0.87163 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.17 10.58 55.49 0.59 -22.58 16 2 C 0.03 0.77 5.04 -17.47 -0.09 0.68 16 3 Si 0.93 20.75 29.58 -169.99 -5.03 15.72 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.50 9.12 -14.91 -0.14 -8.64 16 8 H 0.10 3.01 7.25 -52.49 -0.38 2.63 16 9 N -0.46 -12.04 2.90 -120.90 -0.35 -12.39 16 10 C 0.13 2.88 4.03 -4.20 -0.02 2.87 16 11 C -0.17 -2.89 5.12 -26.51 -0.14 -3.02 16 12 C 0.09 1.55 0.72 -90.57 -0.07 1.49 16 13 C -0.11 -1.44 5.05 -26.64 -0.13 -1.57 16 14 C -0.15 -2.00 6.00 -26.57 -0.16 -2.16 16 15 C 0.06 0.77 6.84 37.20 0.25 1.02 16 16 O -0.37 -6.74 10.72 -40.12 -0.43 -7.17 16 17 C 0.05 0.82 5.18 37.10 0.19 1.01 16 18 O -0.34 -7.95 9.41 -42.52 -0.40 -8.35 16 19 C 0.60 16.23 7.74 53.58 0.41 16.64 16 20 O -0.57 -17.65 16.56 -19.40 -0.32 -17.97 16 21 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 22 H 0.09 2.05 5.87 -51.93 -0.30 1.75 16 23 H 0.07 1.70 7.55 -51.93 -0.39 1.31 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.26 7.87 -51.93 -0.41 0.86 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 2.35 6.38 -51.93 -0.33 2.02 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 264.28 15.07 3.98 3.98 Total: -1.00 -32.53 264.28 -6.17 -38.70 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.33 Total: 1.75 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 0.13 Total: 8.31 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.24 Total: -34.97 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.15 Total: -33.49 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.53 -6.17 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260515454.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.664 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds