Wall clock time and date at job start Mon Mar 30 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48497 * 109.47221 * 240.00446 * 3 2 1 5 5 H 1.48499 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00565 * 3 2 1 7 7 C 1.38885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99724 * 195.79736 * 7 2 1 9 9 N 1.37191 * 120.00502 * 15.79886 * 7 2 1 10 10 C 1.46050 * 118.48241 * 21.67658 * 9 7 2 11 11 C 1.53161 * 109.93105 * 160.39547 * 10 9 7 12 12 C 1.53258 * 108.41363 * 47.73481 * 11 10 9 13 13 C 1.52959 * 109.60640 * 178.89437 * 12 11 10 14 14 C 1.53216 * 109.04969 * 183.01793 * 13 12 11 15 15 C 1.53091 * 109.13524 * 56.73799 * 14 13 12 16 16 O 1.42903 * 109.46020 * 302.29391 * 15 14 13 17 17 C 1.42949 * 114.07411 * 61.23819 * 16 15 14 18 18 O 1.45204 * 108.51597 * 298.72941 * 12 11 10 19 19 C 1.33721 * 118.48819 * 201.70079 * 9 7 2 20 20 O 1.21509 * 118.48398 * 2.19492 * 19 9 7 21 21 H 0.96995 * 119.99949 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.39923 * 280.53449 * 10 9 7 23 23 H 1.09006 * 109.39593 * 40.34600 * 10 9 7 24 24 H 1.08998 * 109.67759 * 167.46692 * 11 10 9 25 25 H 1.09002 * 109.67471 * 287.96759 * 11 10 9 26 26 H 1.09005 * 109.54382 * 302.89263 * 13 12 11 27 27 H 1.08997 * 109.54493 * 63.14837 * 13 12 11 28 28 H 1.09005 * 109.52879 * 296.83317 * 14 13 12 29 29 H 1.09007 * 109.52792 * 176.63423 * 14 13 12 30 30 H 1.09005 * 109.47149 * 182.30088 * 15 14 13 31 31 H 1.09000 * 109.47422 * 62.29511 * 15 14 13 32 32 H 1.08998 * 109.47794 * 179.13197 * 17 16 15 33 33 H 1.09000 * 109.47887 * 59.10665 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1023 1.6965 -1.2125 5 1 1.2837 2.7464 0.0006 6 1 3.1026 1.6964 1.2124 7 6 2.0091 -1.2028 -0.0005 8 1 3.0585 -1.2205 0.2541 9 7 1.3621 -2.3684 -0.3245 10 6 0.1318 -2.2876 -1.1074 11 6 -0.1584 -3.6401 -1.7649 12 6 -0.0099 -4.7360 -0.7039 13 6 -0.3213 -6.0983 -1.3259 14 6 -0.2429 -7.1744 -0.2381 15 6 -1.2069 -6.8136 0.8951 16 8 -0.8744 -5.5227 1.4101 17 6 -0.9760 -4.4681 0.4504 18 8 1.3569 -4.7213 -0.2139 19 6 1.8867 -3.5259 0.0914 20 8 2.8921 -3.4948 0.7731 21 1 -0.4850 0.8400 0.0004 22 1 -0.6969 -2.0183 -0.4526 23 1 0.2439 -1.5274 -1.8805 24 1 -1.1746 -3.6461 -2.1590 25 1 0.5503 -3.8141 -2.5746 26 1 -1.3241 -6.0836 -1.7528 27 1 0.4059 -6.3168 -2.1079 28 1 0.7740 -7.2259 0.1510 29 1 -0.5218 -8.1400 -0.6601 30 1 -1.1258 -7.5542 1.6908 31 1 -2.2278 -6.8006 0.5134 32 1 -0.7222 -3.5199 0.9242 33 1 -1.9955 -4.4219 0.0677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260515454.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:46 Heat of formation + Delta-G solvation = -137.631147 kcal Electronic energy + Delta-G solvation = -18762.684392 eV Core-core repulsion = 15787.943243 eV Total energy + Delta-G solvation = -2974.741149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.19046 -39.91714 -37.61318 -37.28677 -34.52248 -33.88659 -32.63356 -29.74764 -27.02790 -26.23450 -25.36495 -23.79661 -22.04474 -20.53838 -18.91225 -18.62331 -17.54181 -17.24201 -16.94986 -16.80059 -16.24210 -15.68108 -15.57012 -15.21450 -14.85727 -14.49320 -13.91032 -13.67800 -13.43632 -13.39064 -12.84672 -12.77883 -12.45270 -12.34609 -12.15078 -12.07464 -11.85877 -11.72722 -11.28523 -11.05902 -10.82121 -10.32904 -9.83769 -8.34963 -6.05571 1.39864 1.41727 1.52172 1.85794 2.17873 2.39426 2.90454 2.98468 3.08686 3.51344 3.62081 3.65220 4.04514 4.04670 4.17619 4.36104 4.40891 4.51586 4.61005 4.68079 4.75944 4.85486 4.97740 4.99722 5.12154 5.32147 5.37182 5.43187 5.52342 6.21820 6.24525 6.60980 7.03989 7.49505 7.84980 8.65287 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042016 B = 0.007876 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.244993 B = 3554.173994 C = 3698.667543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.003 3.997 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.349 4.349 8 H 0.072 0.928 9 N -0.459 5.459 10 C 0.133 3.867 11 C -0.158 4.158 12 C 0.073 3.927 13 C -0.102 4.102 14 C -0.153 4.153 15 C 0.048 3.952 16 O -0.407 6.407 17 C 0.049 3.951 18 O -0.353 6.353 19 C 0.588 3.412 20 O -0.629 6.629 21 H 0.276 0.724 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -9.272 -6.751 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.476 4.476 8 H 0.090 0.910 9 N -0.191 5.191 10 C 0.010 3.990 11 C -0.196 4.196 12 C 0.036 3.964 13 C -0.139 4.139 14 C -0.191 4.191 15 C -0.027 4.027 16 O -0.326 6.326 17 C -0.028 4.028 18 O -0.266 6.266 19 C 0.343 3.657 20 O -0.524 6.524 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.099 0.901 26 H 0.144 0.856 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.354 -9.372 -6.258 14.646 hybrid contribution 0.687 1.083 0.106 1.287 sum -8.667 -8.289 -6.152 13.479 Atomic orbital electron populations 1.70046 1.06493 1.28869 1.47663 1.26071 0.96546 1.02095 0.95170 0.84984 0.77940 0.76370 0.78937 1.19127 1.18933 1.20452 1.19560 0.94719 0.83982 1.49334 0.91012 1.43150 1.24706 1.03643 1.47561 1.21500 0.86754 0.95893 0.94830 1.22701 1.06327 0.93007 0.97556 1.23233 0.78862 0.99731 0.94549 1.21727 1.04716 0.89376 0.98047 1.22174 1.00216 1.00171 0.96505 1.22932 0.98343 0.83778 0.97674 1.87995 1.90322 1.17322 1.36992 1.23068 0.99424 0.90315 0.89961 1.86544 1.31101 1.28490 1.80429 1.17947 0.85494 0.80300 0.81982 1.90715 1.29993 1.86191 1.45518 0.91361 0.90318 0.91803 0.84467 0.90133 0.85632 0.89936 0.93645 0.86932 0.87882 0.90098 0.91989 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.35 10.58 21.66 0.23 -46.12 16 2 C 0.00 0.18 5.04 84.90 0.43 0.61 16 3 Si 0.99 42.60 29.58 68.60 2.03 44.63 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.35 -20.60 9.12 84.01 0.77 -19.84 16 8 H 0.07 4.57 7.25 -2.91 -0.02 4.54 16 9 N -0.46 -25.12 2.90 -768.16 -2.23 -27.35 16 10 C 0.13 5.80 4.03 86.52 0.35 6.15 16 11 C -0.16 -4.98 5.12 30.73 0.16 -4.82 16 12 C 0.07 2.48 0.72 -10.76 -0.01 2.48 16 13 C -0.10 -2.32 5.05 30.65 0.15 -2.17 16 14 C -0.15 -3.47 6.00 30.70 0.18 -3.29 16 15 C 0.05 1.14 6.84 72.01 0.49 1.63 16 16 O -0.41 -14.54 10.72 -144.31 -1.55 -16.08 16 17 C 0.05 1.70 5.18 71.94 0.37 2.07 16 18 O -0.35 -16.85 9.41 -48.83 -0.46 -17.31 16 19 C 0.59 33.67 7.74 129.96 1.01 34.68 16 20 O -0.63 -41.75 16.56 19.93 0.33 -41.42 16 21 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 22 H 0.08 3.61 5.87 -2.39 -0.01 3.59 16 23 H 0.06 2.88 7.55 -2.38 -0.02 2.87 16 24 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 26 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.36 7.87 -2.38 -0.02 1.34 16 29 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.06 2.73 6.38 -2.39 -0.02 2.71 16 33 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -76.84 264.28 3.36 -73.48 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.11 Total: 12.69 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 3.90 Total: 17.49 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -2.00 Total: -73.48 kcal Atomic # 8 Polarization: -73.14 SS G_CDS: -1.68 Total: -74.82 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -76.84 3.36 -73.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260515454.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.149 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds