Wall clock time and date at job start Mon Mar 30 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48508 * 109.46733 * 239.99909 * 3 2 1 5 5 H 1.48502 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47690 * 119.99795 * 3 2 1 7 7 C 1.38886 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99792 * 195.57509 * 7 2 1 9 9 N 1.37194 * 120.00050 * 15.57506 * 7 2 1 10 10 C 1.46047 * 118.47886 * 21.82535 * 9 7 2 11 11 C 1.53161 * 109.84742 * 160.33032 * 10 9 7 12 12 C 1.53257 * 108.41062 * 47.77112 * 11 10 9 13 13 C 1.52941 * 109.64568 * 178.76292 * 12 11 10 14 14 C 1.53127 * 109.19831 * 183.18660 * 13 12 11 15 15 O 1.42902 * 109.39230 * 57.31016 * 14 13 12 16 16 C 1.42911 * 114.12868 * 298.72114 * 15 14 13 17 17 C 1.52954 * 109.61262 * 58.59284 * 12 11 10 18 18 O 1.45194 * 108.52509 * 298.70287 * 12 11 10 19 19 C 1.33614 * 118.39082 * 201.89694 * 9 7 2 20 20 O 1.21507 * 118.51935 * 2.45272 * 19 9 7 21 21 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.39866 * 40.23422 * 10 9 7 23 23 H 1.08996 * 109.39692 * 280.42145 * 10 9 7 24 24 H 1.09000 * 109.68017 * 167.50514 * 11 10 9 25 25 H 1.09006 * 109.67601 * 288.00959 * 11 10 9 26 26 H 1.09001 * 109.51209 * 303.10232 * 13 12 11 27 27 H 1.08995 * 109.51235 * 63.26978 * 13 12 11 28 28 H 1.09002 * 109.48603 * 297.33098 * 14 13 12 29 29 H 1.09005 * 109.49542 * 177.29263 * 14 13 12 30 30 H 1.09000 * 109.48629 * 301.31265 * 16 15 14 31 31 H 1.08996 * 109.50354 * 181.26895 * 16 15 14 32 32 H 1.08993 * 109.51931 * 296.76621 * 17 12 11 33 33 H 1.09010 * 109.51258 * 56.87547 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6962 -1.2126 5 1 1.2838 2.7464 -0.0006 6 1 3.1025 1.6965 1.2124 7 6 2.0091 -1.2028 0.0005 8 1 3.0593 -1.2199 0.2517 9 7 1.3609 -2.3693 -0.3180 10 6 0.1297 -2.2907 -1.0997 11 6 -0.1595 -3.6460 -1.7518 12 6 -0.0101 -4.7375 -0.6864 13 6 -0.3234 -6.1025 -1.3011 14 6 -0.2489 -7.1749 -0.2107 15 8 -1.1571 -6.8451 0.8421 16 6 -0.8759 -5.6016 1.4880 17 6 -0.9765 -4.4646 0.4673 18 8 1.3568 -4.7204 -0.1970 19 6 1.8859 -3.5234 0.1035 20 8 2.8890 -3.4886 0.7884 21 1 -0.4849 0.8400 -0.0004 22 1 0.2407 -1.5324 -1.8747 23 1 -0.6983 -2.0201 -0.4446 24 1 -1.1758 -3.6544 -2.1458 25 1 0.5492 -3.8227 -2.5609 26 1 -1.3257 -6.0875 -1.7293 27 1 0.4037 -6.3257 -2.0818 28 1 0.7656 -7.2209 0.1853 29 1 -0.5184 -8.1429 -0.6334 30 1 0.1308 -5.6280 1.9050 31 1 -1.5968 -5.4363 2.2887 32 1 -0.7147 -3.5211 0.9462 33 1 -1.9951 -4.4078 0.0834 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260519339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:36 Heat of formation + Delta-G solvation = -116.379138 kcal Electronic energy + Delta-G solvation = -18762.965479 eV Core-core repulsion = 15789.145886 eV Total energy + Delta-G solvation = -2973.819593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58939 -38.39956 -36.02972 -35.37186 -32.78670 -31.65499 -30.95183 -29.27195 -25.32251 -24.40605 -23.47553 -22.25336 -21.02389 -18.65411 -17.04914 -16.76463 -16.03190 -15.76434 -15.29336 -15.10735 -14.68444 -14.38413 -14.15578 -13.54312 -13.25791 -12.97861 -12.53326 -12.16282 -11.78290 -11.68936 -11.32950 -11.17349 -11.06360 -10.73424 -10.50921 -10.35306 -10.29647 -10.15505 -9.74189 -9.29737 -9.04626 -8.86188 -7.81808 -6.34444 -3.95709 3.18003 3.22863 3.26352 3.61543 4.04265 4.08695 4.19462 4.73702 4.76490 4.90305 5.01191 5.14432 5.17149 5.42924 5.58317 5.65159 5.69505 5.77684 5.82352 5.92357 5.99102 6.05648 6.18759 6.29261 6.34130 6.74137 7.12336 7.24115 7.35821 7.55050 8.28590 8.57573 9.09213 9.46182 9.85975 10.67917 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042249 B = 0.007817 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.577009 B = 3581.039648 C = 3724.238910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.454 5.454 10 C 0.134 3.866 11 C -0.169 4.169 12 C 0.119 3.881 13 C -0.139 4.139 14 C 0.062 3.938 15 O -0.387 6.387 16 C 0.064 3.936 17 C -0.173 4.173 18 O -0.354 6.354 19 C 0.595 3.405 20 O -0.573 6.573 21 H 0.268 0.732 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -7.645 -3.896 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.186 5.186 10 C 0.010 3.990 11 C -0.207 4.207 12 C 0.081 3.919 13 C -0.177 4.177 14 C -0.015 4.015 15 O -0.306 6.306 16 C -0.012 4.012 17 C -0.210 4.210 18 O -0.267 6.267 19 C 0.349 3.651 20 O -0.464 6.464 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.626 -7.862 -3.509 10.285 hybrid contribution 0.348 1.287 -0.292 1.364 sum -5.278 -6.576 -3.801 9.249 Atomic orbital electron populations 1.69978 1.05807 1.27585 1.49338 1.25302 0.95547 0.99718 0.96676 0.85927 0.78896 0.80327 0.79154 1.19956 1.20954 1.19736 1.19585 0.95102 0.82153 1.46247 0.88048 1.42936 1.23760 1.04446 1.47501 1.21451 0.88969 0.92814 0.95736 1.22718 1.03116 0.96736 0.98176 1.21937 0.80482 0.95847 0.93624 1.22187 1.02849 0.93599 0.99049 1.22527 0.94219 0.97085 0.87640 1.87852 1.54137 1.38796 1.49827 1.22535 1.01633 0.82719 0.94320 1.22699 0.99966 1.00952 0.97424 1.86558 1.28486 1.31084 1.80598 1.17742 0.85730 0.79199 0.82415 1.90802 1.27637 1.84862 1.43073 0.92185 0.90859 0.89089 0.89594 0.91038 0.89448 0.90023 0.92226 0.89053 0.92352 0.88873 0.88996 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.92 10.57 55.49 0.59 -22.34 16 2 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 3 Si 0.93 20.54 29.58 -169.99 -5.03 15.51 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.45 9.11 -14.91 -0.14 -8.59 16 8 H 0.10 2.97 7.25 -52.49 -0.38 2.59 16 9 N -0.45 -11.73 2.90 -120.93 -0.35 -12.09 16 10 C 0.13 2.91 4.04 -4.20 -0.02 2.90 16 11 C -0.17 -2.89 5.12 -26.52 -0.14 -3.03 16 12 C 0.12 2.07 0.69 -90.54 -0.06 2.01 16 13 C -0.14 -1.90 5.17 -26.70 -0.14 -2.04 16 14 C 0.06 0.85 6.71 37.22 0.25 1.10 16 15 O -0.39 -5.98 10.76 -35.23 -0.38 -6.36 16 16 C 0.06 1.03 6.71 37.22 0.25 1.28 16 17 C -0.17 -2.91 4.49 -26.69 -0.12 -3.03 16 18 O -0.35 -7.85 9.01 -39.48 -0.36 -8.21 16 19 C 0.60 15.66 7.73 53.54 0.41 16.08 16 20 O -0.57 -17.20 16.55 -19.40 -0.32 -17.52 16 21 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 22 H 0.07 1.67 7.54 -51.93 -0.39 1.28 16 23 H 0.09 2.08 5.89 -51.93 -0.31 1.78 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.83 6.41 -51.93 -0.33 1.50 16 33 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 263.64 15.07 3.97 3.97 Total: -1.00 -31.13 263.64 -5.98 -37.11 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.32 Total: 2.55 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.22 Total: 7.37 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.24 Total: -34.42 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.06 Total: -32.09 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.13 -5.98 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.273 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds